Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5656g00005 ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAAGCTTGATTCTATGGAGAAAGACAACACATGTGCAACCGATCAATCATCCGCACTGGAGAATGACTTTTTCGAGCTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCAATACATAAGAGTCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCGAGATAAAGATGTAGGATTTGGTGTCGATACAAGGATGGGTAAGTTAGGGGATTTAGACTCTGGATTAAATGAAATTCCATTACCTGTTCCTTCGGATGAAATGAATTTGAGTCAAGATGAAGACATGATATCTTGGTTGAATTATCCAATGGGAGACTCTCTGCAACATGAATATAGTTTTGATTTCACGCGTGATGTATCTGGGGTCACCGTGAACGAGTTCCCAGCTGCCTCAAATAATTTTGCTCTGATAGATAAAAGAAGTAACGGCAATCAGATATGTAAGGACTCTCACAAAAGTCCTATGCCTGGGGTCTCAAATTCAGAACAAGCAAATCTCACCAAGGGGTCCTCAACTGGAGAAGTTGAGACTAGTGGGCTGAAAGGAAACAACAGCCAGTTATACCAACCATCATCGCAGCAATGTCAAACATCATTTGCACCTATTAGATCCAAAATATCGGATATCACTGAAAATAATACAAGTAATGCAATACTGCAAGCACCTTGCGGGGAAATCACTCAAATTCCATCTTCCTCTAATGGTTTTTGTAGCCTAAATATGCAGAAACAAGATCCTTTATGTCCTAGGAATAGTTCTAACATGATGAATTTCTCCCATTTTGCGAGACCTGCTGCCATTGTGAGAGCTAATCTTCAGAGCATCAGTATGATGTCTGGTTTGTCTTCAGCAAGGTCAGAAAGCCTGGGAACTAGGAAAAAAGATATCGATGCAAGCAGCAGCAACCCTCCTGAATCAACACTCGTTGATTTAAATAATCAAAAGAACTGCCAAAAGCTAGACCCATCAAAGTCTGAGTTGAAACCAGCCAATCCAAAATCTCTCGGACAGAAGGCTGATTTTGCAAAGCAGTTTGATCCTGCCTGCAAAGAGGATGATGCATTTAAGGATGATCAAATTTCCAAACAGGTTCCCACAGAAAGTGGCACTAAAGGACTATCGGCTGTTGAGAAAACCATTAACGCTGAAGTAGCCTCTTCCTCCATTTGCTCAGGAAATGCTATGAAGAGAGGTTCAGATGATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAGGACTCTGAGTGTCAAAGTGAAGAAGTTGAGGAAGAATCAGTGGACATTAAGAAGGCAGCTCCTCCCCGAGGTACAAGTTCTAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTCTCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGGGCATTACAAGAACTCATCCCAAATTGCAATAAGGTGGATAAAGCATCGATGCTGGATGAGGCAATTGAGTATCTTAAAACCCTTCAACTCCAAGTCCAAATTATGTCGATGGGAGCTGGTTTATACGCATCTCCAAATCCAATGATGTTACACCCAGGAATGCAGCACATGCAGACACCACACATGGCTTCATTCTCACCTATAGGAATCGGCATGCAAATGGGTTTAGGAATGGGTTATGGGATGGGCTTCCCTGACATGAATAGTGGATCCCCTAGATTCCCAATGGTACAGGTGCCTCAAATGCAAGGAACTCATTTCCCTGTTTTACCTATGCCTGGCCCCTCTGCTGCTTTACATGGGATGCCAACATCAAGTCCTCAAGCATTCGGATTTCCTGGTCCGGGAATTTACATGCCAATGCCAAATGCTCCAAGAGTTTCTATGCCAGGAGGGCCCCTTATGAACCCTTCAACTTCAGGACAAAACGCCTTTGGAGCTGCAGGACCTGGGGAAACTGCTGATTCGGCTTCACCCTCTAGCTTAAAGGATCCTATGCCGAACGTGAATTCACAAGTTATGCCAGGCTCAGGTGGCAGTAACTCCACAATGCAGATGTCCACTCAGTGTGAAGCGACGAACGTTGAAACTGATCAGAGAGCACTAGTGCGTACTGGCGGGCATACCTCTAGTATTAATGACAGTGGAGCTACTAACCCTAGCAAAGAACATGACCATGTCATTAGTAAATCTTGTAAGGACTGA 2232 0.4359 MPLYELYRMTKAKLDSMEKDNTCATDQSSALENDFFELVWENGQISMQGKSSRARKSPIHKSLPSHSLPSHSPRTRDKDVGFGVDTRMGKLGDLDSGLNEIPLPVPSDEMNLSQDEDMISWLNYPMGDSLQHEYSFDFTRDVSGVTVNEFPAASNNFALIDKRSNGNQICKDSHKSPMPGVSNSEQANLTKGSSTGEVETSGLKGNNSQLYQPSSQQCQTSFAPIRSKISDITENNTSNAILQAPCGEITQIPSSSNGFCSLNMQKQDPLCPRNSSNMMNFSHFARPAAIVRANLQSISMMSGLSSARSESLGTRKKDIDASSSNPPESTLVDLNNQKNCQKLDPSKSELKPANPKSLGQKADFAKQFDPACKEDDAFKDDQISKQVPTESGTKGLSAVEKTINAEVASSSICSGNAMKRGSDDANKNLKRKSQDTEDSECQSEEVEEESVDIKKAAPPRGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYASPNPMMLHPGMQHMQTPHMASFSPIGIGMQMGLGMGYGMGFPDMNSGSPRFPMVQVPQMQGTHFPVLPMPGPSAALHGMPTSSPQAFGFPGPGIYMPMPNAPRVSMPGGPLMNPSTSGQNAFGAAGPGETADSASPSSLKDPMPNVNSQVMPGSGGSNSTMQMSTQCEATNVETDQRALVRTGGHTSSINDSGATNPSKEHDHVISKSCKD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5656g00005 743 MobiDBLite consensus disorder prediction 423 439 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 177 217 - -
Pral5656g00005 743 SMART finulus 474 523 IPR011598 GO:0046983
Pral5656g00005 743 Gene3D - 463 526 IPR036638 GO:0046983
Pral5656g00005 743 MobiDBLite consensus disorder prediction 47 81 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 466 481 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 663 694 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 414 481 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 728 743 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 706 727 - -
Pral5656g00005 743 FunFam Basic helix-loop-helix transcription factor 463 526 - -
Pral5656g00005 743 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Pral5656g00005 743 Coils Coil 429 449 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 168 217 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 318 337 - -
Pral5656g00005 743 CDD bHLH_AtPIF_like 468 530 IPR047265 -
Pral5656g00005 743 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Pral5656g00005 743 MobiDBLite consensus disorder prediction 638 694 - -
Pral5656g00005 743 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 IPR044273 GO:0003700|GO:0006355
Pral5656g00005 743 MobiDBLite consensus disorder prediction 306 337 - -
Pral5656g00005 743 Coils Coil 14 34 - -
Pral5656g00005 743 MobiDBLite consensus disorder prediction 706 743 - -
Pral5656g00005 743 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 529 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5656g00005 Pral-Chr5656 23162 30164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5656g00005 1 592 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.318 3.73e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5656g00005 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5656g00005 K12126 - gmx:100794974 751.51