Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5656g00005 | ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAAGCTTGATTCTATGGAGAAAGACAACACATGTGCAACCGATCAATCATCCGCACTGGAGAATGACTTTTTCGAGCTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCAATACATAAGAGTCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCGAGATAAAGATGTAGGATTTGGTGTCGATACAAGGATGGGTAAGTTAGGGGATTTAGACTCTGGATTAAATGAAATTCCATTACCTGTTCCTTCGGATGAAATGAATTTGAGTCAAGATGAAGACATGATATCTTGGTTGAATTATCCAATGGGAGACTCTCTGCAACATGAATATAGTTTTGATTTCACGCGTGATGTATCTGGGGTCACCGTGAACGAGTTCCCAGCTGCCTCAAATAATTTTGCTCTGATAGATAAAAGAAGTAACGGCAATCAGATATGTAAGGACTCTCACAAAAGTCCTATGCCTGGGGTCTCAAATTCAGAACAAGCAAATCTCACCAAGGGGTCCTCAACTGGAGAAGTTGAGACTAGTGGGCTGAAAGGAAACAACAGCCAGTTATACCAACCATCATCGCAGCAATGTCAAACATCATTTGCACCTATTAGATCCAAAATATCGGATATCACTGAAAATAATACAAGTAATGCAATACTGCAAGCACCTTGCGGGGAAATCACTCAAATTCCATCTTCCTCTAATGGTTTTTGTAGCCTAAATATGCAGAAACAAGATCCTTTATGTCCTAGGAATAGTTCTAACATGATGAATTTCTCCCATTTTGCGAGACCTGCTGCCATTGTGAGAGCTAATCTTCAGAGCATCAGTATGATGTCTGGTTTGTCTTCAGCAAGGTCAGAAAGCCTGGGAACTAGGAAAAAAGATATCGATGCAAGCAGCAGCAACCCTCCTGAATCAACACTCGTTGATTTAAATAATCAAAAGAACTGCCAAAAGCTAGACCCATCAAAGTCTGAGTTGAAACCAGCCAATCCAAAATCTCTCGGACAGAAGGCTGATTTTGCAAAGCAGTTTGATCCTGCCTGCAAAGAGGATGATGCATTTAAGGATGATCAAATTTCCAAACAGGTTCCCACAGAAAGTGGCACTAAAGGACTATCGGCTGTTGAGAAAACCATTAACGCTGAAGTAGCCTCTTCCTCCATTTGCTCAGGAAATGCTATGAAGAGAGGTTCAGATGATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAGGACTCTGAGTGTCAAAGTGAAGAAGTTGAGGAAGAATCAGTGGACATTAAGAAGGCAGCTCCTCCCCGAGGTACAAGTTCTAAGAGAAGTCGTGCAGCTGAAGTGCATAATCTCTCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGGGCATTACAAGAACTCATCCCAAATTGCAATAAGGTGGATAAAGCATCGATGCTGGATGAGGCAATTGAGTATCTTAAAACCCTTCAACTCCAAGTCCAAATTATGTCGATGGGAGCTGGTTTATACGCATCTCCAAATCCAATGATGTTACACCCAGGAATGCAGCACATGCAGACACCACACATGGCTTCATTCTCACCTATAGGAATCGGCATGCAAATGGGTTTAGGAATGGGTTATGGGATGGGCTTCCCTGACATGAATAGTGGATCCCCTAGATTCCCAATGGTACAGGTGCCTCAAATGCAAGGAACTCATTTCCCTGTTTTACCTATGCCTGGCCCCTCTGCTGCTTTACATGGGATGCCAACATCAAGTCCTCAAGCATTCGGATTTCCTGGTCCGGGAATTTACATGCCAATGCCAAATGCTCCAAGAGTTTCTATGCCAGGAGGGCCCCTTATGAACCCTTCAACTTCAGGACAAAACGCCTTTGGAGCTGCAGGACCTGGGGAAACTGCTGATTCGGCTTCACCCTCTAGCTTAAAGGATCCTATGCCGAACGTGAATTCACAAGTTATGCCAGGCTCAGGTGGCAGTAACTCCACAATGCAGATGTCCACTCAGTGTGAAGCGACGAACGTTGAAACTGATCAGAGAGCACTAGTGCGTACTGGCGGGCATACCTCTAGTATTAATGACAGTGGAGCTACTAACCCTAGCAAAGAACATGACCATGTCATTAGTAAATCTTGTAAGGACTGA | 2232 | 0.4359 | MPLYELYRMTKAKLDSMEKDNTCATDQSSALENDFFELVWENGQISMQGKSSRARKSPIHKSLPSHSLPSHSPRTRDKDVGFGVDTRMGKLGDLDSGLNEIPLPVPSDEMNLSQDEDMISWLNYPMGDSLQHEYSFDFTRDVSGVTVNEFPAASNNFALIDKRSNGNQICKDSHKSPMPGVSNSEQANLTKGSSTGEVETSGLKGNNSQLYQPSSQQCQTSFAPIRSKISDITENNTSNAILQAPCGEITQIPSSSNGFCSLNMQKQDPLCPRNSSNMMNFSHFARPAAIVRANLQSISMMSGLSSARSESLGTRKKDIDASSSNPPESTLVDLNNQKNCQKLDPSKSELKPANPKSLGQKADFAKQFDPACKEDDAFKDDQISKQVPTESGTKGLSAVEKTINAEVASSSICSGNAMKRGSDDANKNLKRKSQDTEDSECQSEEVEEESVDIKKAAPPRGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYASPNPMMLHPGMQHMQTPHMASFSPIGIGMQMGLGMGYGMGFPDMNSGSPRFPMVQVPQMQGTHFPVLPMPGPSAALHGMPTSSPQAFGFPGPGIYMPMPNAPRVSMPGGPLMNPSTSGQNAFGAAGPGETADSASPSSLKDPMPNVNSQVMPGSGGSNSTMQMSTQCEATNVETDQRALVRTGGHTSSINDSGATNPSKEHDHVISKSCKD | 743 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 423 | 439 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 177 | 217 | - | - | |
Pral5656g00005 | 743 | SMART | finulus | 474 | 523 | IPR011598 | GO:0046983 | |
Pral5656g00005 | 743 | Gene3D | - | 463 | 526 | IPR036638 | GO:0046983 | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 47 | 81 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 466 | 481 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 663 | 694 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 414 | 481 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 728 | 743 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 706 | 727 | - | - | |
Pral5656g00005 | 743 | FunFam | Basic helix-loop-helix transcription factor | 463 | 526 | - | - | |
Pral5656g00005 | 743 | Pfam | Helix-loop-helix DNA-binding domain | 472 | 518 | IPR011598 | GO:0046983 | |
Pral5656g00005 | 743 | Coils | Coil | 429 | 449 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 168 | 217 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 318 | 337 | - | - | |
Pral5656g00005 | 743 | CDD | bHLH_AtPIF_like | 468 | 530 | IPR047265 | - | |
Pral5656g00005 | 743 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 468 | 517 | IPR011598 | GO:0046983 | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 638 | 694 | - | - | |
Pral5656g00005 | 743 | PANTHER | TRANSCRIPTION FACTOR PIF3 | 1 | 696 | IPR044273 | GO:0003700|GO:0006355 | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 306 | 337 | - | - | |
Pral5656g00005 | 743 | Coils | Coil | 14 | 34 | - | - | |
Pral5656g00005 | 743 | MobiDBLite | consensus disorder prediction | 706 | 743 | - | - | |
Pral5656g00005 | 743 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 465 | 529 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5656g00005 | Pral-Chr5656 | 23162 | 30164 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5656g00005 | 1 | 592 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G09530 | 36.318 | 3.73e-72 | 243 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pral5656g00005 | HLH | 8.2e-14 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5656g00005 | K12126 | - | gmx:100794974 | 751.51 |