Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5656g00002 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAACTTAGGAAAGGCCTCTGGTCTCCCGAGGAAGACGAGAAGCTTCTCAATTACATCACCAAGCATGGCCATGGATGTTGGAGCTCCGTCCCCAAACTCGCCGGCTTGCAGAGGTGCGGCAAGAGCTGCAGGTTGCGGTGGATAAATTACCTGAGGCCTGATTTGAAAAGAGGAGCATTCTCGCAGCAGGAAGAGGATTTGATTATTGAACTCCACGTAGTCCTTGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCCGGAAGAACTGACAATGAGATTAAAAATCTATGGAATTCCTGCCTCAAGAAGAAGCTCAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAATGACAAGGAGAAGGCCCCCTCAGCCGTCAAAAGCCATCATAAAGCCTCAGTGGCATCCAATGAACTGGGCGTAGCAGAGCCTGCGAAACCAAAGACAAATGCAGTGCCTTCGGAGCGATACCCAATCCAAGTTCCTTCCGGCTCTAAGATCAGCAATAGCTGCACTATTAGCAGCAATCTGACCAATGGCCGACCCACCCAGGATTTGTTCCTTGATAGCTCCATTACCAGTTGTGGTCCTTCCGATATGATGGGTTACTTCTCTTTTCAGCAGGTGAACTATCCACCACATGTTGGGCTATCCGCAAACCCCAACGGCTCTCTTTGCTTCATGTCAGGTTCCAGTTCCTCTCAGATGATGTCAGAGCTCAATTCTAGTATGACTCCCGCTATGCTAAATTCTGTGCCAAGCTCTATTTTCCCGACAACACATGTAAGTACCCCTGTTAGTCTCCAGTCTGATAATCCTTCCATATCCTCTGGCGATATTGATGGGGTTCAGAACTGGGAAGCTGGTATCCTTGCTAACAATGGAAGCAAAAGCAATGGGCGCAGTGGGAGTATCCAATTGCATAGCAGCAATAACTTCCTTGAGAACAACAGTTTAGTAGCATGGGGATTGGCAGACTCTGTGAAGGCTGATAAAGAAGCTCAAGTACCTCCACAAGCAGAACAGGAAGAAATTAAATGGTCTGAGTATCTGAGCACCCCATTTTTCCTGGGAAACACAGCACAGAATCAAAATTGTCAATCTATTTACAGTGAGGTTAAACCAGAGACAGGCTTCATAACAGATGAATCAAGTACCAGTTGGCACCAAACCCAGCATCCGTCCGTTTTTCAAGCTTCAGACATCTACGCCAAGGATCTGCAAAGATTCTCAGTGGCTTTTGGACAAACCCTGTAG 1308 0.4755 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEDLIIELHVVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKEKAPSAVKSHHKASVASNELGVAEPAKPKTNAVPSERYPIQVPSGSKISNSCTISSNLTNGRPTQDLFLDSSITSCGPSDMMGYFSFQQVNYPPHVGLSANPNGSLCFMSGSSSSQMMSELNSSMTPAMLNSVPSSIFPTTHVSTPVSLQSDNPSISSGDIDGVQNWEAGILANNGSKSNGRSGSIQLHSSNNFLENNSLVAWGLADSVKADKEAQVPPQAEQEEIKWSEYLSTPFFLGNTAQNQNCQSIYSEVKPETGFITDESSTSWHQTQHPSVFQASDIYAKDLQRFSVAFGQTL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5656g00002 435 Gene3D - 68 146 - -
Pral5656g00002 435 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5656g00002 435 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral5656g00002 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral5656g00002 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pral5656g00002 435 FunFam MYB transcription factor 68 140 - -
Pral5656g00002 435 PANTHER MYB DOMAIN PROTEIN 55 1 316 - -
Pral5656g00002 435 MobiDBLite consensus disorder prediction 119 144 - -
Pral5656g00002 435 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5656g00002 435 SMART sant 66 114 IPR001005 -
Pral5656g00002 435 SMART sant 13 63 IPR001005 -
Pral5656g00002 435 CDD SANT 17 61 IPR001005 -
Pral5656g00002 435 FunFam Myb transcription factor 11 67 - -
Pral5656g00002 435 Gene3D - 11 67 - -
Pral5656g00002 435 MobiDBLite consensus disorder prediction 119 174 - -
Pral5656g00002 435 CDD SANT 69 109 IPR001005 -
Pral5656g00002 435 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5656g00002 435 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5656g00002 Pral-Chr5656 7513 9561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5656g00002 1 435 MYB Transcription Factor Family AT1G09540 47.416 5.17e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5656g00002 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5656g00002 K09422 - qsa:O6P43_010970 600.897