Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5655g00012 ATGTCCTCCTCAAGACCTAGCCAGTCATCCAGTAACTCGGGAAGATCAAGACATACTGCTCGAGTTATTGCTCAGACCACTGTAGATGCAAAACTACATGCAAATTTTGAGGAGTCTGGTAGCTCTTTTGACTACTCAAACTCCGTGCGTATCTCTGGTACAGTAAATGGAGAGCAGCAACCAAGATCTGACCGAGTGACAACAGCTTACCTCCATCACATGCAGAAAGGCAAGCTGATCCAGCCTTTTGGGTGCTTGCTAGCCTTAGATGAGAAAACATGCAAGGTGATTGCGTACAGTGAGAATGCTCCTGAAATGTTGACCATGGTTAGTCATGCAGTCCCCAGTGTAGGTGACAACGCTGCCCTTGGCATTGGCACTGACATAAGAACCATATTCACTGCCCCAAGTGCTTCTGCATTGCAGAAAGCATTAGGGTTTGGGGAAGTTTCACTTCTCAATCCTATTCTAGTCCATTGCAAGACCTCTGGAAAGCCCTTTTACGCAATTATCCATCGGGTGACTGGAAGCTTGATAATTGATTTTGAGCCCGTCAAGCCTTTTGAAGTTCCCATGACTGCAGCTGGTGCCCTTCAATCTTACAAACTTGCAGCCAAAGCAATTACTAGATTGCAATCTTTGCCTAGTGGGAGTATGGAAAGGCTATGTGATACGATGGTCCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCATGGGGAAGTAATTGCTGAGATCACAAAGCCAGGTTTAGAGCCATATCTGGGTCTGCATTACCCAGCCACTGATATTCCACAGGCTTCACGTTTTTTATTCATGAAAAACAAGGTACGTATGATAGTGGATTGTCGTGCAAGGCATGTGAAGGTGCTTCAAGATGAAAAACTTCCATTTGAGTTAACCTTGTGTGGTTCAACCTTGAGGGCCCCTCATAGTTGCCATTTGCAATATATGGAGAACATGAACTCCATTGCTTCCCTGGTTATGGCAGTAGTGGTCAACGACAGTGATGAAGATGTTGACAGCTCTGATACTGTGCAGCCGCAGAAGAGAAAGAGACTTTGGGGTTTAGTAGTTTGCCATAACACTACACCAAGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAATAAAGAATTAGAGTTGGAAAACCAGATTGTTGAGAAAAACATCCTGCGCACCCAGACACTTCTATGTGATATGCTGATGCGAGATGCACCCCTAGGTATTATATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCCTCTTGTATAAAAACAAGGTATGGAGACTAGGAGTGACACCAAGCGAATCCCAGATCCGAGAGATATCTATATGGCTCTCTGAGAACCATAAGGATTCCACAGGTTTAAGTACAGATAGCCTGGCTGAAGCAGGGTTACCCAGTGCTCTTGCTCTTGGTGATATAGCGTGTGGGATGGCAGCTGTGAGAATATCTTCGAAAGATATGGTTTTCTGGTTTCGATCGCATACTGCTGCAGAAATTCGATGGGGTGGTGCGAAGCACGAGCCGGGTGAACAGGATGACAACAGGAGGATGCATCCAAGATCATCATTTAAAGCTTTCCTTGAAGTTGTGAAGTCAAGGAGTTTACCATGGAAAGACTATGAAATGGACGCCATCCATTCCTTGCAGTTAATCCTAAGGAACGCGTTTAAAGATACAGAGAGTGTGGTGGATGTTAACACCAATGCAATTAACACAGGACTGAGCGATTTGAGGATTGAAGGGATGCAGGAATTGGAAGCAGTGACAAGTGAGATGGTTCGATTAATTGAAACAGCAACAGTGCCAATTTTGGCCGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTGCTGAGTTGACGGGGCTTCAAGTTGATGAAGCAATTGGGAAGCATCTACTCACACTAGTTGAGGATTCTTCGACTGATAGGGTCAAGAGGATGCTGGACATGGCACTGCAAGGTGAAGAAGAGCAGAACGTCCAATTTGAGATTAAAACACATGCAGCTGAGATTGATTCTGGTCCTATCAGGTTGGTTGTTAATGCTTGTGCAAGTAGAGACCTTCGAGACAACGTAGTGGGGGTTTGTTTCGTGGCCCAAGATATAACTGCTCAGAAGACAGTTATGGACAAATTCACTCGAATCGAAGGTGATTACAAGGCGATTGTGCAGAATCCAAACCCGTTGATCCCTCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCCGCAATGATCAAGTTAACTGGATGGAAGCGGGAGGAGGTGATGGACAAAATGCTCTTAGGGGAGGTCTTTGGAACTCACGCAGCTTGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATTTTGGAGTTGTACTTAATAAAGCCATGGCCGGTTTGGAAACTGAGAAGGTTGCCTTTGGCTTTTTTTCTCGGAATGGAAAGTATAATGAGTGCCTGCTTTCTGTAAGTAAGAAGTTGGACATAGAGGGTACAGTTACGGGGGTTTTCTGCTTCTTGCAGCTTGCGAGCCCAGAGTTGCAACAGGCATTACATATTCAGCGGCTATCTGAACAAACTGCCATGAAGAGACTGAAGGCTTTAACTTACATGAAAAGGCAGATACGGAATCCTTTATGCGGGATTGTGTTCTCCCGTAAAATGTTGGAAGGTACTGAGTTGGGAACTGAACAGAAACAACTTCTGCACACTAGTTCCCTGTGCCAGCGCCAGCTCAGCAAAGTTCTTGATGATTCTGACCTGGACAGCATCATTGATGGGTGCTTAGATCTGGAGATGGTTGAATTTACTCTGCATGAAGTATTGGTTGCCTCCCTTAGCCAAGTGATGACAAAGAGCAATGCAAAGGGTATTACAATAGTGAACGAGGTGGCAGAGCAGATCATGACAGAAACCTTGTATGGTGACTGTCTCAGGCTTCAACAGGTCTTAGCTGACTTCTTATTGATGTCCGTCACTTTTACACCTTCTGAAGGTAAGGTGGTTGTTGCGGCCTCTTTAACCAAAGATCAGTTGGGACAATCCGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCGGAAGCATTGCTAAACGAGATGTTTGGAAGTGATGGGCAAGAATCTGAAGAGGGTATTAACCTGCTTATTAGTAGAAAACTGGTAAAGCTCATGAATGGAGATGTCCGTTATCTGAGGGAAGCGGGCAAATCATCCTTCATTTTAACTGTTGAACTCGCCGCAGCCCAGAAATAG 3369 0.4461 MSSSRPSQSSSNSGRSRHTARVIAQTTVDAKLHANFEESGSSFDYSNSVRISGTVNGEQQPRSDRVTTAYLHHMQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDNAALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPFEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCRARHVKVLQDEKLPFELTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDSDEDVDSSDTVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREISIWLSENHKDSTGLSTDSLAEAGLPSALALGDIACGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDNRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESVVDVNTNAINTGLSDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLQVDEAIGKHLLTLVEDSSTDRVKRMLDMALQGEEEQNVQFEIKTHAAEIDSGPIRLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMIKLTGWKREEVMDKMLLGEVFGTHAACCRLKNQEAFVNFGVVLNKAMAGLETEKVAFGFFSRNGKYNECLLSVSKKLDIEGTVTGVFCFLQLASPELQQALHIQRLSEQTAMKRLKALTYMKRQIRNPLCGIVFSRKMLEGTELGTEQKQLLHTSSLCQRQLSKVLDDSDLDSIIDGCLDLEMVEFTLHEVLVASLSQVMTKSNAKGITIVNEVAEQIMTETLYGDCLRLQQVLADFLLMSVTFTPSEGKVVVAASLTKDQLGQSVHLANLELSITHAGSGIPEALLNEMFGSDGQESEEGINLLISRKLVKLMNGDVRYLREAGKSSFILTVELAAAQK 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5655g00012 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Pral5655g00012 1122 MobiDBLite consensus disorder prediction 1 20 - -
Pral5655g00012 1122 Gene3D - 406 579 IPR043150 -
Pral5655g00012 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1008 1117 IPR003594 -
Pral5655g00012 1122 FunFam Phytochrome 614 745 - -
Pral5655g00012 1122 ProSiteProfiles Histidine kinase domain profile. 902 1121 IPR005467 -
Pral5655g00012 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 186 IPR035965 -
Pral5655g00012 1122 Pfam PAS fold 69 185 IPR013654 GO:0006355
Pral5655g00012 1122 SMART pas_2 620 686 IPR000014 -
Pral5655g00012 1122 SMART pas_2 750 819 IPR000014 -
Pral5655g00012 1122 ProSiteProfiles PAC domain profile. 691 747 IPR000700 -
Pral5655g00012 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Pral5655g00012 1122 SMART HKATPase_4 1007 1119 IPR003594 -
Pral5655g00012 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1113 IPR036890 -
Pral5655g00012 1122 Pfam GAF domain 218 401 IPR003018 GO:0005515
Pral5655g00012 1122 PIRSF Phytochrome_conventional 1 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pral5655g00012 1122 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355|GO:0009584
Pral5655g00012 1122 CDD PAS 629 735 IPR000014 -
Pral5655g00012 1122 CDD PAS 762 873 IPR000014 -
Pral5655g00012 1122 Gene3D PAS domain 78 321 - -
Pral5655g00012 1122 SMART HisKA_10 895 960 IPR003661 GO:0000155|GO:0007165
Pral5655g00012 1122 Pfam PAS fold 621 735 IPR013767 GO:0006355
Pral5655g00012 1122 Pfam PAS fold 751 873 IPR013767 GO:0006355
Pral5655g00012 1122 SMART gaf_1 218 411 IPR003018 GO:0005515
Pral5655g00012 1122 Gene3D PAS domain 764 876 - -
Pral5655g00012 1122 Gene3D - 199 562 IPR029016 -
Pral5655g00012 1122 FunFam Phytochrome 406 537 - -
Pral5655g00012 1122 Coils Coil 398 418 - -
Pral5655g00012 1122 SUPERFAMILY GAF domain-like 198 398 - -
Pral5655g00012 1122 Gene3D PAS domain 612 749 - -
Pral5655g00012 1122 NCBIfam PAS domain S-box protein 625 741 IPR000014 -
Pral5655g00012 1122 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Pral5655g00012 1122 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Pral5655g00012 1122 SUPERFAMILY GAF domain-like 409 587 - -
Pral5655g00012 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 884 1105 - -
Pral5655g00012 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Pral5655g00012 1122 Gene3D - 958 1121 IPR036890 -
Pral5655g00012 1122 Pfam Phytochrome region 414 589 IPR013515 GO:0006355|GO:0009584
Pral5655g00012 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5655g00012 Pral-Chr5655 77111 83058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5655g00012 1 1122 Histidine Kinase Gene Family AT1G09570 80.677 0.0 1908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5655g00012 K12120 - gmx:100790763 1915.58