Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5653g00017 ATGTCATCATCGAATTCTCCGTGCGCTGCGTGCAAGTGCCTGAGGCGGAAATGCACGCAAGAATGCGTGTTCGCACCGTACTTCCCACCGGACAATCCTCAGAGGTTCGCTTGCGTCCACAGGGTATTCGGGGCAAGCAATGTCGCTAAGCTTCTCAATGAGCTGAACGCTTCGCAGAGAGACGACGCCGTCAAGTCCCTGGCTTACGAAGCCGAGGCCCGTCTCCGGGACCCAGTCTATGGTTGTGTGGGTCTCATCTCCATCCTCCAGCACAGGCTCAGGCTGATCCAAGTGGAACTCAACAATGCCAAGAAGGAGCTCGCCACGTATATTGGACCTCAGGCTCTTCAGTCCATGCCTCCCACCATTCTAGCGCCTTCTGGAATGATCCCACAGCAACACCCAACCAACCCATATTCTTCCACCACCGGTTATCCCTACAACAACATGCCACCGCCTGCGCCTATGACCAATATTCCAGCCAGTGGCTCTTCTCATAGCGGCCAACTGGTACTTCGTGACCCTTCCCAACAGCACCAGATCTTGGACGCTCAGCAGTTGGCCGCGGCCGTGGCGGCGAGAGAGCAACAAGATATGTTTCGGGGTTACGAGCAGCAGCAGCAGCAACAAGAGTTTCTGAGATTCAATGGTGGATACGATGTGGGCTCGGTTTCTGGGAGTGGATTCAACAATCATATTTCTTCAACTGCTGCTCCTAGCGACATGTCTCCTTCCTTGGCTCTCGGCTCCTTCGACAGCCCTTACGGCGGCCAGATGCAACCGCCACAGACGGAGCACCACCACCACCAGCTTCAAGCTCAGCTAATGCTTTCCCCCCAGCAGCCGCCACCACAGCAACAAAGCCAGCAGTCACAGCAAGCCCACCAGCAGCTACAGTCAGAAAGCGAGGAGGGTAGGAGTGGCATCTGCCTTTCTAGTTGA 942 0.5584 MSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVAKLLNELNASQRDDAVKSLAYEAEARLRDPVYGCVGLISILQHRLRLIQVELNNAKKELATYIGPQALQSMPPTILAPSGMIPQQHPTNPYSSTTGYPYNNMPPPAPMTNIPASGSSHSGQLVLRDPSQQHQILDAQQLAAAVAAREQQDMFRGYEQQQQQQEFLRFNGGYDVGSVSGSGFNNHISSTAAPSDMSPSLALGSFDSPYGGQMQPPQTEHHHHQLQAQLMLSPQQPPPQQQSQQSQQAHQQLQSESEEGRSGICLSS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5653g00017 313 Coils Coil 86 106 - -
Pral5653g00017 313 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pral5653g00017 313 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pral5653g00017 313 MobiDBLite consensus disorder prediction 256 313 - -
Pral5653g00017 313 MobiDBLite consensus disorder prediction 235 313 - -
Pral5653g00017 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5653g00017 Pral-Chr5653 71691 75020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5653g00017 1 254 AS2 family AT5G66870 55.056 1.45e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5653g00017 LOB 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5653g00017 - - gmx:102664012 320.087