Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5653g00011 ATGGACTTGAGCTTGGATTTGAGTTTGTCTTTTGTTCCCAAAACTATTTCTGAGTTTCTTCGTGAGGTTGCTAAGACCGGAGATAGGCACGAGAAATTAGCGATGCTTGATGACTTTGTCAAGAGATTGGAGGATGAAATGAGGAAGATCGAAGCCTTCAAACGGGAGCTTCCACTCTGCATGCTGCTCGTGAACGATGCTATAACGAGGTTGAAGGAGGAGAAAGTACGGTTGGTGGAAGTGCTAGACCGACCCGAGATTGAAGAATTCATACCGTTGAAAGCAAATTCTGGAGAGAACCGACAATTAACTATGGAAAAAGATAGCTGTGACAAGAAGAACTGGATGAACTCCGCTCAACTGTGGAGTGCTGAAACCAAATTGGGAAGTGAAAATGATCGGTCTGTGCCGGAGAACCCAATTCATTCACGAAATCTGAAAAACAGAGGTGGGGCATTTATCCCCTTTAATGGAAATTTGGTTATGTCAAAGCCAGTGACGAAGGAAGACAAGGAAATCTCACAAGTTCCTAGTCTTAGCTTGATGACTCCGGCGTCCGAACTCAATCTCAAGAATTCAAAAACTTGTAGCAGAAATTGTTCGGGTGCGTCTTTCCTTACAGGCCAGCTTGACGGACAAGTCCAACCACAAACACAACACTTGCAGCAAAATCCTAGAAAACAAAGGCGATGCTGGTCTCCGGAGCTTCACCGGCGATTTGTTGACGCGCTTCAACAACTGGGGGGAGCTCAAGTGGCCACTCCTAAACAGATTAGAGAATTAATGCAGGTGGAAGGCCTAACAAACGATGAAGTGAAAAGCCATTTGCAAAAGTACAGACTTCATGTGAGAAGACTTCCGGCTTCAACAATTAACCAAGGAAATGGCTTATGGATGGTAGAAGATCAATGCGGAGAGAAGTCAAAAATAAACTTATCACAGTCTGGTTCTCCCCAAGGACCTCTCCTCCTCGGAGGTTCTGCTAAGGGTCTATCGAGCTCTGGAGATGGCGAAGAAGATGAGAAATCAGACTGCCATAGTTGGAAGGGTGGTCTGCAACAGCAAGCGGAAGCTGATGTGCTGTCTTAA 1089 0.4545 MDLSLDLSLSFVPKTISEFLREVAKTGDRHEKLAMLDDFVKRLEDEMRKIEAFKRELPLCMLLVNDAITRLKEEKVRLVEVLDRPEIEEFIPLKANSGENRQLTMEKDSCDKKNWMNSAQLWSAETKLGSENDRSVPENPIHSRNLKNRGGAFIPFNGNLVMSKPVTKEDKEISQVPSLSLMTPASELNLKNSKTCSRNCSGASFLTGQLDGQVQPQTQHLQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRLPASTINQGNGLWMVEDQCGEKSKINLSQSGSPQGPLLLGGSAKGLSSSGDGEEDEKSDCHSWKGGLQQQAEADVLS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5653g00011 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Pral5653g00011 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Pral5653g00011 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Pral5653g00011 362 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Pral5653g00011 362 Gene3D - 226 283 - -
Pral5653g00011 362 Pfam Myb-like DNA-binding domain 229 280 IPR001005 -
Pral5653g00011 362 MobiDBLite consensus disorder prediction 309 362 - -
Pral5653g00011 362 FunFam Myb family transcription factor 226 284 - -
Pral5653g00011 362 Coils Coil 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5653g00011 Pral-Chr5653 58700 60728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5653g00011 1 277 G2-like Transcription Factor Family AT4G37180 43.816 1.40e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral5653g00011 Myb_DNA-binding 1.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5653g00011 - - qsa:O6P43_024686 444.506