Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5652g00020 ATGCCTGTCAAATCGGCGCAATCATCGTTTAGGGATCGGACACAGGAGTTTCAGAGTATAGCAGAGAGGCTAAAGAAATCAGTGTCGTTCGGATCAGGATCAAACGGGCCAAGCAGTAGTTCAAGATCGGAGGAACAGCGGTCAGCGATAGCAATTCAGTCAGAATTCAATAGGAGGGCTTCCAAGATTGGTTATGGAATACATCAGACATCACAGAAACTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACGTCGGTTTTCGATGACCCCACCATGGAAATCCAGGAGCTCACAGCAGTTATTAAGCAAGATATCACTGCATTGAACTCTGCCGTTGTGGAACTGCAGCTAATCAGCAACGCTAGAAATGACAGCGGAAATATTTCTAGTGACACAACTAGTCATTCAACCACAGTGGTGGATGACCTTAAAACCCGATTGATGAGTACCACAAAAGAGTTTAAAGAAGTCCTTACCATGCGAACAGAGAACTTGAAGGTACATGAGAATAGAAGACAGTTGTTTTCTTCCACTGCTTCTAAGGAAGCTGCAAATCCTTTTGTTCGTCAACGTCCCTTGGCTGCAAAGTCAGCTGCCAATGCCCCTGCACCCCCATGGGCCAGTGGGTCAGCATCTACATCTCAGTTGTTTCCAAAGAAGCAAGTGGATGGGGAGAGTCAACCGTTGCTGGTGCAGCAGCAGCAGCAGCAACAAATGGTTCCATTGCAGGACACATATATGCAGAGCAGAGCCGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGCAGCATTTTTAATCAATTGGCTACACTTGTCTCCCAGCAAGGGGAGATTGCCATCAGGATTGATGAGAACATGGACGATACGTTGGCAAATGTAGAAGGGGCACAGGGGGCTTTGCTAAAATATCTGAACAGTATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTAATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCATAG 1011 0.45 MPVKSAQSSFRDRTQEFQSIAERLKKSVSFGSGSNGPSSSSRSEEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVELQLISNARNDSGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKEAANPFVRQRPLAAKSAANAPAPPWASGSASTSQLFPKKQVDGESQPLLVQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5652g00020 336 SMART tSNARE_6 239 306 IPR000727 -
Pral5652g00020 336 Pfam SNARE domain 280 332 IPR000727 -
Pral5652g00020 336 PANTHER SYNTAXIN 50 328 IPR045242 -
Pral5652g00020 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Pral5652g00020 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Pral5652g00020 336 CDD SNARE_syntaxin5 247 325 - -
Pral5652g00020 336 SUPERFAMILY t-snare proteins 54 299 IPR010989 GO:0016020|GO:0016192
Pral5652g00020 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral5652g00020 336 MobiDBLite consensus disorder prediction 194 216 - -
Pral5652g00020 336 Gene3D - 50 299 - -
Pral5652g00020 336 MobiDBLite consensus disorder prediction 28 48 - -
Pral5652g00020 336 FunFam Syntaxin-32 like 50 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5652g00020 Pral-Chr5652 94881 98905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5652g00020 1 336 SNARE and Associated Proteins AT3G24350 65.928 7.87e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5652g00020 K08490 - gmx:100778493 462.996