Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5652g00011 ATGGATGTTCTCTCACCAGAACTATATCTTGAAGGTTCATCCGACACCTGCCCATTGCTGATGGAGCAGACTGGGCACTTGAACAGTAGTCAGCACGTCATTGACATCTCTGGGAGTAGTGATGCCTCAACATCAACTTCACTTCATGATAGATATTTTAGCAACATAGGTACATCTGAGCATGGAGACGGCCCTACAAGTGCAGGATTCCCTGTTTCTCAGCAATCAGTTCCTCTCTCTAGTGTATCCAACGGATCTAATTCAAGGAATTCTTCCTCAACAAGACTGGGGGAAACCCGTCGACTGAGGAATCCATTGAATTCTGGCTTTTGGATATCAATTGAGCTATTCCTTACTGTAAGCCAGATTGTTGCATCTATTATTGTTTTATCTTTGTCAAGGCATGAGCATCCAAGCACTCCATTGTTTGCATGGATCGTCGGTTATGCCAGTGGTTATGTTGCTCTCCTTCCTCTGCTCTATTGGCGGTATTATCATGGAAATGAGATTCAAGAACAAGATTCATCTCAGCAGGGTGAGACTTCTCAGATGAATGTTTCTTCAAGGACCTATCATTCTGTTACTAGAACCAGCGGACAAGAGGACAATCAGGCTAGTGCTGTATCATCAATAAGCAATCAGGGTTCATTGTTGGTGAATACAAGACTGAAGAAACTAATGGAATACTTCAAAATGGCCTTAGATTGCTATTTTGCCGTGTGGTTTGTTGTTGGCATTGTATGGATCTTTGGGGCACAATCGTCTTCTGATGCAGCTCCTAACTTGTATAGGTTAACTATAGTGTTTCTCATCTTTAGCTGTATTGGTTATGCTATGCCATTCCTTGTATGTGCGACAATATGTTGTTGTCTGCCTTGCATAATTTCCATTGTTGGGTTTAGAGAAGATCAGATACAAACCAGAGGGGCAACAACTGAATCCATTAATGCCTTGCCAACATACAAATTTAAAATGAAAAGTAAAAACAATTCTAGCAACTCTGCTACTGGTGAAGGCGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTCTTATCTCTGGAGAGGATGCGGCTTGCTGCATCTGCCTGATAATGTATGAAGACAACGATGAGTTAAGAGAATTGGCTTGTTCTCATCTTTTTCACAAAGATTGTGTAGATAAGTGGTTGAAGATAAACGCATTATGCCCCCTTTGCAAGGGTGAGGTTGGTGAGGTCGAGAATGCAAGAGGATCATCAGGCTCCGTAGAAGAGACAGGCATGCGAGTTGAACATATATAG 1281 0.4239 MDVLSPELYLEGSSDTCPLLMEQTGHLNSSQHVIDISGSSDASTSTSLHDRYFSNIGTSEHGDGPTSAGFPVSQQSVPLSSVSNGSNSRNSSSTRLGETRRLRNPLNSGFWISIELFLTVSQIVASIIVLSLSRHEHPSTPLFAWIVGYASGYVALLPLLYWRYYHGNEIQEQDSSQQGETSQMNVSSRTYHSVTRTSGQEDNQASAVSSISNQGSLLVNTRLKKLMEYFKMALDCYFAVWFVVGIVWIFGAQSSSDAAPNLYRLTIVFLIFSCIGYAMPFLVCATICCCLPCIISIVGFREDQIQTRGATTESINALPTYKFKMKSKNNSSNSATGEGGIVAAGTEKERLISGEDAACCICLIMYEDNDELRELACSHLFHKDCVDKWLKINALCPLCKGEVGEVENARGSSGSVEETGMRVEHI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5652g00011 426 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Pral5652g00011 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Pral5652g00011 426 Pfam Ring finger domain 358 400 IPR001841 -
Pral5652g00011 426 SMART ring_2 359 399 IPR001841 -
Pral5652g00011 426 SUPERFAMILY RING/U-box 350 406 - -
Pral5652g00011 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 406 IPR013083 -
Pral5652g00011 426 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5652g00011 Pral-Chr5652 46356 51781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5652g00011 14 409 C3H Transcription Factor Family AT1G80400 50.250 7.59e-143 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5652g00011 - - pcin:129302441 712.22