Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5652g00009 ATGGAGCAGACTGGGCACTTGAACAGTAGTCAGCACGTCATTGACATCTCTGGGAGTAGTGATGCCTCAACATCAACTTCACTTCATGATAGATATTTTAGCAACATAGGTACATCTGAGCATGGAGACGGCCCTACAAGTGCAGGATTCCCTGTTTCTCAGCAATCAGTTCCTCTCTCTAGTGTATCCAACGGATCTAATTCAAGGAATTCTTCCTCAACAAGACTGGGGGAAACCCGTCGACTGAGGAATCCATTGAATTCTGGCTTTTGGATATCAATTGAGCTATTCCTTACTGTAAGCCAGATTGTTGCATCTATTATTGTTTTATCTTTGTCAAGGCATGAGCATCCAAGCACTCCATTGTTTGCATGGATCGTCGGTTATGCCAGTGGTTATGTTGCTCTCCTTCCTCTGCTCTATTGGCGGTATTATCATGGAAATGAGATTCAAGAACAAGATTCATCTCAGCAGGGTGAGACTTCTCAGATGAATGTTTCTTCAAGGACCTATCATTCTGTTACTAGAACCAGCGGACAAGAGGACAATCAGGCTAGTGCTGTATCATCAATAAGCAATCAGGGTTCATTGTTGGTGAATACAAGACTGAAGAAACTAATGGAATACTTCAAAATGGCCTTAGATTGCTATTTTGCCGTGTGGTTTGTTGTTGGCATTGTATGGATCTTTGGGGCACAATCGTCTTCTGATGCAGCTCCTAACTTGTATAGGTTAACTATAGTGTTTCTCATCTTTAGCTGTATTGGTTATGCTATGCCATTCCTTGTATGTGCGACAATATGTTGTTGTCTGCCTTGCATAATTTCCATTGTTGGGTTTAGAGAAGATCAGATACAAACCAGAGGGGCAACAACTGAATCCATTAATGCCTTGCCAACATACAAATTTAAAATGAAAAGTAAAAACAATTCTAGCAACTCTGCTACTGGTGAAGGCGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTCTTATCTCTGGAGAGGATGCGGCTTGCTGCATCTGCCTGATAATGTATGAAGACAACGATGAGTTAAGAGAATTGGCTTGTTCTCATCTTTTTCACAAAGATTGTGTAGATAAGTGGTTGAAGATAAACGCATTATGCCCCCTTTGCAAGGGTGAGGTTGGTGAGGTCGAGAATGCAAGAGGATCATCAGGCTCCGTAGAAGAGACAGGCATGCGAGTTGAACATATATAG 1221 0.4218 MEQTGHLNSSQHVIDISGSSDASTSTSLHDRYFSNIGTSEHGDGPTSAGFPVSQQSVPLSSVSNGSNSRNSSSTRLGETRRLRNPLNSGFWISIELFLTVSQIVASIIVLSLSRHEHPSTPLFAWIVGYASGYVALLPLLYWRYYHGNEIQEQDSSQQGETSQMNVSSRTYHSVTRTSGQEDNQASAVSSISNQGSLLVNTRLKKLMEYFKMALDCYFAVWFVVGIVWIFGAQSSSDAAPNLYRLTIVFLIFSCIGYAMPFLVCATICCCLPCIISIVGFREDQIQTRGATTESINALPTYKFKMKSKNNSSNSATGEGGIVAAGTEKERLISGEDAACCICLIMYEDNDELRELACSHLFHKDCVDKWLKINALCPLCKGEVGEVENARGSSGSVEETGMRVEHI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5652g00009 406 SMART ring_2 339 379 IPR001841 -
Pral5652g00009 406 MobiDBLite consensus disorder prediction 1 22 - -
Pral5652g00009 406 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 383 - -
Pral5652g00009 406 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Pral5652g00009 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 386 IPR013083 -
Pral5652g00009 406 MobiDBLite consensus disorder prediction 55 77 - -
Pral5652g00009 406 Pfam Ring finger domain 338 380 IPR001841 -
Pral5652g00009 406 SUPERFAMILY RING/U-box 330 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5652g00009 Pral-Chr5652 46356 51781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5652g00009 11 389 C3H Transcription Factor Family AT1G80400 51.175 1.42e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5652g00009 - - pcin:129302441 692.96