LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5652g00004	ATGGCAATGCTGAGAATGGAACAGCATAGCAATGGCAATCACAGCTCGAGCCAACAGTCAGTGAAACCAGTCTTTCATGACTTTATGGGCATGAAGCCCACTGATTCGCCACTTGTTGCGGCCCCCAAAACCGCTGATACGAGGCCGGCGGAGGCGTCGCCGTCGTCGGCGTCAGTCTCTGTTGGCGCCCCTTCGGGTGTTGCCCGTGGCCCCCTCTCAACCACCTCTGATACCGCTTCTGACAGACAGTTAGGAAATCACCTCGAGGGAGTCCCATTCTATAGCTCAAGGAGTGATCTTTCTGGCACTGAGATTAGTAACAGAATAGTAGGAAACAAGAGAAGTAACTCTGATTCCAGTTTTATGAGTTACTCCAGAGATGCCTTCCAAATGGTTCCTGACTCTCTTCAAAATTTGCATTTAATGAAGTCAAGGAAGCCGACTTCTGCTTCTCACATATATCAGCCTTCCATGGGCGCTAAGACTGACGTCAATAAATGGGAGCGGTCTATTCTCATGAATACTGGTTCTTCCATGCAACATCCACCACATGGCGGTCAATTAGCATCCTTTGTGCACCAGATACCTTCTAACAAGAGCAGGGATGCTAATGCTGGTCCTTCATTTATTTCTCATTCCGCTGCTGATGAAGGATCTAGAACAGGAATCAAGGGCCCTGGGATCTTGAGTTCCATGAACACTACCACCGCTGCTTATGAGAAATCTCTGTCTGCACTTGGCGGAAGCAGGCCAAAGCCATTGACCGGTATAATAGACCCAGAATCTTCCATGCCTCCAAGTCAACAGGGTTTAGCATCTGCCAGCTGCCAGATGACTATTTTTTATGGGGGTCAAGCTCACGTTTTTGATAATGTCCACCCCAATAAGGCAGAAATTATAATGGCTTTAGCTGGGTCAAATGGTGGGTGTTGTTCCACAACATACTCCCAAAAACCTGCCGTGAAGCTCCCTAATCACAGCCACGTGCCGTGTGGAGATAGTGAGACTGGTATGGTGAGCAAGATTACACCCCCGCAGGCGCCTCAAGGGGGATCATCTTTCGCAGGCACTTCTAATCTTGCCATCAAACCTGGCAATCGAATGTCTACTCAAGCAGGGGCACATCAGGGGAGGATTGTTGCCAATGAAGACGTCAGGAATTCAATTAAAGCATCAGATCCCAGTTATGAGGGCAAAAGGACGCGATCACATTGA	1215	0.4872	MAMLRMEQHSNGNHSSSQQSVKPVFHDFMGMKPTDSPLVAAPKTADTRPAEASPSSASVSVGAPSGVARGPLSTTSDTASDRQLGNHLEGVPFYSSRSDLSGTEISNRIVGNKRSNSDSSFMSYSRDAFQMVPDSLQNLHLMKSRKPTSASHIYQPSMGAKTDVNKWERSILMNTGSSMQHPPHGGQLASFVHQIPSNKSRDANAGPSFISHSAADEGSRTGIKGPGILSSMNTTTAAYEKSLSALGGSRPKPLTGIIDPESSMPPSQQGLASASCQMTIFYGGQAHVFDNVHPNKAEIIMALAGSNGGCCSTTYSQKPAVKLPNHSHVPCGDSETGMVSKITPPQAPQGGSSFAGTSNLAIKPGNRMSTQAGAHQGRIVANEDVRNSIKASDPSYEGKRTRSH	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5652g00004	404	ProSiteProfiles	Tify domain profile.	271	306	IPR010399	-
	Pral5652g00004	404	MobiDBLite	consensus disorder prediction	1	90	-	-
	Pral5652g00004	404	SMART	tify_2	271	306	IPR010399	-
	Pral5652g00004	404	MobiDBLite	consensus disorder prediction	345	376	-	-
	Pral5652g00004	404	MobiDBLite	consensus disorder prediction	69	83	-	-
	Pral5652g00004	404	Pfam	tify domain	273	305	IPR010399	-
	Pral5652g00004	404	MobiDBLite	consensus disorder prediction	345	404	-	-
	Pral5652g00004	404	PANTHER	PROTEIN TIFY 4A-RELATED-RELATED	101	343	IPR040390	-
	Pral5652g00004	404	MobiDBLite	consensus disorder prediction	8	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5652g00004	Pral-Chr5652	24890	28972	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5652g00004	22	349	Tify Gene Family	AT4G32570	40.294	2.49e-49	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Tify	Pral5652g00004		tify	4.4e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5652g00004	-		-	qsa:O6P43_019399	432.18