Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5651g00002 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCAATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAGCAGCCACAACCCCAGCAGTCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTTCTGATGCAGAGGCATGCGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACATCAACAGCAGCAGCATCAACAGCAGCAACCACCCCAGCAACAGCAGCCACCACCACAACAGCAGAGAAGAGATGGATCTCATCTCTTAAATGGAAGTACAAATGGGATAGTTGAGAATCCGCTGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAAATGTACGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGACGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCCTGGACCCAAGTCATGCCTCCATATTGAAGTCAGGTGCAGTTTCTGGCCAACCTTCGGGGCAATTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTACTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCGGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTCAAGGGATGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCAAAAGGCTTTTATGCAGGGTCCTCAGCCCTTTCATCAACTTCAAATGTTGTCGCCCCAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGGCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATAGGAATATTGGCCTAAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGTCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTTCATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCTTAACATGCATCAGCAAGACAAAGTGGGGGCTATTGGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGACAGGCCCTTCTCCAAGTTCAGCTCCCTCAACCCCTTCAACTCATACTCCTGGTGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCTTGTGATGTTTGGCACTGACGGCACTGGAACTCTCACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGATGATGGATGTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGCATGGATATAAGCAAAGGTTTCTCATTTGCCGAAGTCAATTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCGCAGATTCTCTAAAGGCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTACAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACACTTCGCACCTTCACAGGACATTCCGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACACAAACATGCCAGTACTCATTACAGGGACATACGAAGTCAATACATTCTGTCTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCGGTCAGGGTTTGGACTCTTGGATCGGGGAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAAAAAATTTCATTCTTGTGTTTTCCATCCAACATATTTTTCATTGCTGATCGTTGGATGTTACCAGTCGTTGGAGCTTTGGGATATGGCCGAGAACAAGACAATGACTTTGTCGGCTCACGAAGGGCTAATTGCTTCCTTGGCAGTCTCAAACGTAACTGGTTTGGTTGCCTCCGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2694 0.4573 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQHQQQQHQQQQPPQQQQPPPQQQRRDGSHLLNGSTNGIVENPLMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSGAVSGQPSGQLLHGVGGGMSQQVQARSPQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSGSDENRRLRMLLNNRNIGLSKDGLSNPIGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQFHQQHQQQNTNPQQQLQQHALSNQQSQTSNLNMHQQDKVGAIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPLVMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVDDGCLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFADSLKAKATLEEHSSLITDVRFSTSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETQTCQYSLQGHTKSIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGKKFHSCVFHPTYFSLLIVGCYQSLELWDMAENKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5651g00002 897 MobiDBLite consensus disorder prediction 151 178 - -
Pral5651g00002 897 FunFam Transcriptional corepressor LEUNIG 741 897 - -
Pral5651g00002 897 Gene3D - 747 897 IPR015943 GO:0005515
Pral5651g00002 897 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 897 - -
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 655 690 - -
Pral5651g00002 897 SMART WD40_4 817 856 IPR001680 GO:0005515
Pral5651g00002 897 SMART WD40_4 691 731 IPR001680 GO:0005515
Pral5651g00002 897 SMART WD40_4 858 897 IPR001680 GO:0005515
Pral5651g00002 897 SMART WD40_4 606 645 IPR001680 GO:0005515
Pral5651g00002 897 SMART WD40_4 648 687 IPR001680 GO:0005515
Pral5651g00002 897 SMART WD40_4 773 811 IPR001680 GO:0005515
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 655 690 IPR001680 GO:0005515
Pral5651g00002 897 Pfam WD domain, G-beta repeat 614 644 IPR001680 GO:0005515
Pral5651g00002 897 Pfam WD domain, G-beta repeat 860 897 IPR001680 GO:0005515
Pral5651g00002 897 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
Pral5651g00002 897 Pfam WD domain, G-beta repeat 653 687 IPR001680 GO:0005515
Pral5651g00002 897 Pfam WD domain, G-beta repeat 775 810 IPR001680 GO:0005515
Pral5651g00002 897 CDD WD40 609 897 - -
Pral5651g00002 897 ProSitePatterns Trp-Asp (WD) repeats signature. 674 688 IPR019775 -
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 865 897 IPR001680 GO:0005515
Pral5651g00002 897 MobiDBLite consensus disorder prediction 457 535 - -
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 865 897 - -
Pral5651g00002 897 MobiDBLite consensus disorder prediction 85 178 - -
Pral5651g00002 897 SUPERFAMILY WD40 repeat-like 607 897 IPR036322 GO:0005515
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 644 IPR001680 GO:0005515
Pral5651g00002 897 Pfam LisH 10 36 IPR006594 GO:0005515
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 698 740 IPR001680 GO:0005515
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 698 736 - -
Pral5651g00002 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 820 IPR001680 GO:0005515
Pral5651g00002 897 SMART Lish 8 40 IPR006594 GO:0005515
Pral5651g00002 897 MobiDBLite consensus disorder prediction 85 143 - -
Pral5651g00002 897 MobiDBLite consensus disorder prediction 459 519 - -
Pral5651g00002 897 MobiDBLite consensus disorder prediction 414 444 - -
Pral5651g00002 897 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral5651g00002 897 Coils Coil 111 139 - -
Pral5651g00002 897 Gene3D - 589 746 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5651g00002 Pral-Chr5651 5534 15997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5651g00002 692 896 Miscellaneous Gene Families AT5G08390 26.190 1.05e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral5651g00002 WD40 0.069 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5651g00002 - - pvy:116133053 1412.51