Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5650g00076 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCAATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAGCAGCCACAACCCCAGCAGTCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTTCTGATGCAGAGGCATGCGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACATCAACAGCAGCAGCATCAACAGCAGCAACCACCCCAGCAACAGCAGCCACCACCACAACAGCAGAGAAGAGATGGATCTCATCTCTTAAATGGAAGTACAAATGGGATAGTTGAGAATCCGCTGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAAATGTACGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGACGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCCTGGACCCAAGTCATGCCTCCATATTGAAGTCAGGTGCAGTTTCTGGCCAACCTTCGGGGCAATTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTACTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCGGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTCAAGGGATGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCAAAAGGCTTTTATGCAGGGTCCTCAGCCCTTTCATCAACTTCAAATGTTGTCGCCCCAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGGCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATAGGAATATTGGCCTAAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGTCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTTCATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCTTAACATGCATCAGCAAGACAAAGTGGGGGCTATTGGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGGCTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGACAGGCCCTTCTCCAAGTTCAGCTCCCTCAACCCCTTCAACTCATACTCCTGGTGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCTTGTGATGTTTGGCACTGACGGCACTGGAACTCTCACATCACCTTCAAATCAGTTGGCTGACATGGATCGATTTGTTGATGATGGATGTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGCATGGATATAAGCAAAGGTTTCTCATTTGCCGAAGTCAATTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCGCAGATTCTCTAAAGGCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTACAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACACTTCGCACCTTCACAGGACATTCCGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACACAAACATGCCAGTACTCATTACAGGGACATACGAAGTCAATACATTCTGTCTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCGGTCAGGGTTTGGACTCTTGGATCGGGGAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAAAAAATTTCATTCTTGTGTTTTCCATCCAACATATTTTTCATTGCTGATCGTTGGATGTTACCAGTCGTTGGAGCTTTGGGATATGGCCGAGAACAAGACAATGACTTTGTCGGCTCACGAAGGGCTAATTGCTTCCTTGGCAGTCTCAAACGTAACTGGTTTGGTTGCCTCCGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2667 0.4578 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQHQQQQHQQQQPPQQQQPPPQQQRRDGSHLLNGSTNGIVENPLMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSGAVSGQPSGQLLHGVGGGMSQQVQARSPQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSGSDENRRLRMLLNNRNIGLSKDGLSNPIGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQFHQQHQQQNTNPQQQLQQHALSNQQSQTSNLNMHQQDKVGAIGSVTADGSMSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPLVMFGTDGTGTLTSPSNQLADMDRFVDDGCLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFADSLKAKATLEEHSSLITDVRFSTSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETQTCQYSLQGHTKSIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGKKFHSCVFHPTYFSLLIVGCYQSLELWDMAENKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5650g00076 888 SMART WD40_4 682 722 IPR001680 GO:0005515
Pral5650g00076 888 SMART WD40_4 597 636 IPR001680 GO:0005515
Pral5650g00076 888 SMART WD40_4 849 888 IPR001680 GO:0005515
Pral5650g00076 888 SMART WD40_4 808 847 IPR001680 GO:0005515
Pral5650g00076 888 SMART WD40_4 639 678 IPR001680 GO:0005515
Pral5650g00076 888 SMART WD40_4 764 802 IPR001680 GO:0005515
Pral5650g00076 888 MobiDBLite consensus disorder prediction 151 178 - -
Pral5650g00076 888 Gene3D - 580 737 IPR015943 GO:0005515
Pral5650g00076 888 SUPERFAMILY WD40 repeat-like 598 888 IPR036322 GO:0005515
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 856 888 - -
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515
Pral5650g00076 888 MobiDBLite consensus disorder prediction 457 535 - -
Pral5650g00076 888 FunFam Transcriptional corepressor LEUNIG 732 888 - -
Pral5650g00076 888 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Pral5650g00076 888 MobiDBLite consensus disorder prediction 85 178 - -
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 856 888 IPR001680 GO:0005515
Pral5650g00076 888 Gene3D - 738 888 IPR015943 GO:0005515
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Pral5650g00076 888 SMART Lish 8 40 IPR006594 GO:0005515
Pral5650g00076 888 MobiDBLite consensus disorder prediction 85 143 - -
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515
Pral5650g00076 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515
Pral5650g00076 888 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 888 - -
Pral5650g00076 888 MobiDBLite consensus disorder prediction 459 519 - -
Pral5650g00076 888 MobiDBLite consensus disorder prediction 414 444 - -
Pral5650g00076 888 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral5650g00076 888 Pfam LisH 10 36 IPR006594 GO:0005515
Pral5650g00076 888 CDD WD40 600 888 - -
Pral5650g00076 888 Coils Coil 111 139 - -
Pral5650g00076 888 Pfam WD domain, G-beta repeat 605 635 IPR001680 GO:0005515
Pral5650g00076 888 Pfam WD domain, G-beta repeat 644 678 IPR001680 GO:0005515
Pral5650g00076 888 Pfam WD domain, G-beta repeat 851 888 IPR001680 GO:0005515
Pral5650g00076 888 Pfam WD domain, G-beta repeat 766 801 IPR001680 GO:0005515
Pral5650g00076 888 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5650g00076 Pral-Chr5650 338098 348545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5650g00076 683 887 Miscellaneous Gene Families AT5G08390 26.190 9.51e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral5650g00076 WD40 0.068 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5650g00076 - - pvy:116133053 1384.78