Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5650g00074 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGACGTTTACATACATGATTACTTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCCGATCCTGTCGCAATTGATGCTCCAGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATCGCTCGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACACAGTTACTTAAGGGAAGGGAGCAGCAGCAACAGCAGCCACAGCAGCCACAACCCCAGCAGTCACAGCAGCAGCAGCAGCACATGCAGATCCAACAGCTTCTGATGCAGAGGCATGCGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACATCAACAGCAGCAGCATCAACAGCAGCAACCACCCCAGCAACAGCAGCCACCACCACAACAGCAGAGAAGAGATGGATCTCATCTCTTAAATGGAAGTACAAATGGGATAGTTGAGAATCCGCTGATGCGGCAAAACCCTGGTACTGCAAATGCACTGGCCACAAAAATGTACGAGGAAAGGTTAAAACCGCCTCTTCAGAGGGATTCTTTGGACGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCCTGGACCCAAGTCATGCCTCCATATTGAAGTCAGGTGCAGTTTCTGGCCAACCTTCGGGGCAATTGTTGCATGGTGTTGGTGGTGGGATGTCTCAACAAGTTCAAGCTCGTAGTCCACAATTACCAGGGTCTACTCCGGATATAAAGAGCGAGATAAATCCTGTTTTAAATCCTAGAGCTGCGGGTCCTGAAGGATCATTGATAGGAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTCAAGGGATGGCCACTTAAAGGGTTGGATCAACTACGCTCTGGTCTTCTCCAACCGCAAAAGGCTTTTATGCAGGGTCCTCAGCCCTTTCATCAACTTCAAATGTTGTCGCCCCAACATCTTATGCTTGCTCAACAAAATCTTGCATCACCATCTGGCAGTGATGAAAATAGACGACTTAGAATGCTTTTGAATAATAGGAATATTGGCCTAAGTAAGGATGGTCTTTCAAACCCCATTGGTGATGTGGTATCAAATGTTGGGTCACCACTTCAAGCTGGCAGTCCTCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTTCATCAGCAGCATCAACAACAGAATACCAATCCACAGCAGCAGCTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTCAAATCTTAACATGCATCAGCAAGACAAAGTGGGGGCTATTGGTAGTGTCACAGCAGATGGGAGCATGTCAAACTCTTTCAGAGGAAATGATCAGACTGGGAGAAAGAGAAAGCAGCCCGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGACAGGCCCTTCTCCAAGTTCAGCTCCCTCAACCCCTTCAACTCATACTCCTGGTGATGTGATATCGATGCCTGCTGTGCCTCATAATGGTAGTTCTTCAAAGCCTCTTGTGATGTTTGGCACTGACGGCACTGGAACTCTCACATCACCTTCAAATCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGACATGGATCGATTTGTTGATGATGGATGTCTTGATGACAATGTTGAGTCTTTTTTATCCCATGATGATACGGACCCTAGAGATGCTGTTGGTCGTTGCATGGATATAAGCAAAGGTTTCTCATTTGCCGAAGTCAATTCTGTACGAGCTAGTACAAGCAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTCTTATGGTTCGCAGATTCTCTAAAGGCAAAAGCTACTCTTGAAGAACACTCATCTTTGATAACTGATGTCCGTTTTAGTACAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGATATACACTTCGCACCTTCACAGGACATTCCGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGATGGTGAAATACGATATTGGAGCATAAATAATGGCAGCTGTGCTAGAGTCTCTAAGGGTGGCACTGCCCAGATGAGGTTTCAACCTCGCATAGGGAGGTATCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAAACACAAACATGCCAGTACTCATTACAGGGACATACGAAGTCAATACATTCTGTCTGCTGGGACCCTTCTGGGGAGTTGCTTGCATCTGTCAGTGAGGACTCGGTCAGGGTTTGGACTCTTGGATCGGGGAGTGAAGGGGAATGTGTCCATGAGCTGAGCTGTAATGGGAAAAAATTTCATTCTTGTGTTTTCCATCCAACATATTTTTCATTGCTGATCGTTGGATGTTACCAGTCGTTGGAGCTTTGGGATATGGCCGAGAACAAGACAATGACTTTGTCGGCTCACGAAGGGCTAATTGCTTCCTTGGCAGTCTCAAACGTAACTGGTTTGGTTGCCTCCGCCAGTCATGACAAGTTTGTAAAGCTTTGGAAGTAA 2679 0.4573 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKGREQQQQQPQQPQPQQSQQQQQHMQIQQLLMQRHAQQQQQQQQQQQQHQQQQHQQQQPPQQQQPPPQQQRRDGSHLLNGSTNGIVENPLMRQNPGTANALATKMYEERLKPPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSGAVSGQPSGQLLHGVGGGMSQQVQARSPQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDQLRSGLLQPQKAFMQGPQPFHQLQMLSPQHLMLAQQNLASPSGSDENRRLRMLLNNRNIGLSKDGLSNPIGDVVSNVGSPLQAGSPLLPRGDTDMLMKLKLAQFHQQHQQQNTNPQQQLQQHALSNQQSQTSNLNMHQQDKVGAIGSVTADGSMSNSFRGNDQTGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAVPHNGSSSKPLVMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVDDGCLDDNVESFLSHDDTDPRDAVGRCMDISKGFSFAEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWFADSLKAKATLEEHSSLITDVRFSTSMPRLATSSFDKTVRVWDVDNPGYTLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVSKGGTAQMRFQPRIGRYLAAAAENVVSILDVETQTCQYSLQGHTKSIHSVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGKKFHSCVFHPTYFSLLIVGCYQSLELWDMAENKTMTLSAHEGLIASLAVSNVTGLVASASHDKFVKLWK 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 735 IPR001680 GO:0005515
Pral5650g00074 892 MobiDBLite consensus disorder prediction 151 178 - -
Pral5650g00074 892 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 685 IPR001680 GO:0005515
Pral5650g00074 892 Pfam WD domain, G-beta repeat 609 639 IPR001680 GO:0005515
Pral5650g00074 892 Pfam WD domain, G-beta repeat 689 726 IPR001680 GO:0005515
Pral5650g00074 892 Pfam WD domain, G-beta repeat 855 892 IPR001680 GO:0005515
Pral5650g00074 892 Pfam WD domain, G-beta repeat 770 805 IPR001680 GO:0005515
Pral5650g00074 892 Pfam WD domain, G-beta repeat 648 682 IPR001680 GO:0005515
Pral5650g00074 892 CDD WD40 604 892 - -
Pral5650g00074 892 MobiDBLite consensus disorder prediction 85 178 - -
Pral5650g00074 892 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 892 - -
Pral5650g00074 892 MobiDBLite consensus disorder prediction 457 526 - -
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Pral5650g00074 892 SMART Lish 8 40 IPR006594 GO:0005515
Pral5650g00074 892 MobiDBLite consensus disorder prediction 85 143 - -
Pral5650g00074 892 Gene3D - 584 741 IPR015943 GO:0005515
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 685 - -
Pral5650g00074 892 FunFam Transcriptional corepressor LEUNIG 736 892 - -
Pral5650g00074 892 SUPERFAMILY WD40 repeat-like 602 892 IPR036322 GO:0005515
Pral5650g00074 892 MobiDBLite consensus disorder prediction 459 514 - -
Pral5650g00074 892 MobiDBLite consensus disorder prediction 414 444 - -
Pral5650g00074 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral5650g00074 892 Pfam LisH 10 36 IPR006594 GO:0005515
Pral5650g00074 892 Coils Coil 111 139 - -
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 639 IPR001680 GO:0005515
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Pral5650g00074 892 Gene3D - 742 892 IPR015943 GO:0005515
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 731 - -
Pral5650g00074 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 815 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 643 682 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 768 806 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 686 726 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 812 851 IPR001680 GO:0005515
Pral5650g00074 892 SMART WD40_4 601 640 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5650g00074 Pral-Chr5650 338093 348545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5650g00074 687 891 Miscellaneous Gene Families AT5G08390 26.190 1.11e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral5650g00074 WD40 0.068 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5650g00074 - - pvy:116133053 1398.65