Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5650g00053 ATGATCATGGATTCTCCTGCTGCTACGAAGAAAACCCCCATTTCCGTCGCCACTGCCGATGCTGCTGCTTCTTCTGAATCTCCTCCTGTTCAAGAGTCCCCTTTTTTCAGCTTTGTAAACAATTTATCTCCAATAAAGTCTGTCAAGGCTTCTCGTGTGGCTCAAGATTTCCTAGGACTAAATTCTCCCCCTGTTGTCTTCACGTCACCACGTATTAATCCCCATCGTGGATCCAAGTTCTTGGAGGAGAGGCCTCAATGCTCTCAATCAGCCGCTGTAGAAATTTCTCAAAGTGTCAATGGGGGCAAGAGCCTTGCTGATAATCCTGTTGATTCTGACAAATCCACTTTTTTATCGCTGGGATTTATAACTGATAGCAAGAGAAATTATTCAAATACTCAACACTGCGGCTCTTCACTGTGTGTAGAATCTGTAGATGAATATTTAGCTGATCCTTCAGATATTGATCATACGCCTTCGGGGCATTCAGTCAACCCCGACGTGAAACAATCCAATGAGAATGTTGGATCATCACTAAATGACTTAACTCACTCAAAGAAAGCCCAATCAAAAGTTGATGACAAAAATGGTCCTGGTGACCAGATGAACGAACCTTTGATCTTGTTAGAGGAGTCTGAAGCCTCCTATCAAGAAAAGCCAGGACTAGTTGATGAAGCAAGGAAAGTAGAAGGGGAGAAAGCCGTTGAATGGCCTTCTCAAGAATGCGCAAAGTTAGAATCTATTTTGTCTTCTGACCATGTTTTTGAGAAGCAACGTTCTGATGATTCAATTGTCCAGGATTGGGTGATTGTACAATCTCAGTCAAGAGCATTCCTTTGCTGGATTTCATCATGTTGTCATCACCAAAAGCACCGAGGCCTGCGTAGACGGTGCCTTCAGTTTGAGGAGGTTGCGTCAAGTGTTTTTGGAAATTCGAACAGCTCCCCGCTTCAAGCCCATGTTCCCGAAGATTTAATACCATCAGCGAACTCCTCAGATTCAAAAGCTCTAGAAGCTTCTGATGTTGCACTAAATGACACTTCTGGTGAAACGAGAATGGCCAAGCAGCCCAAACCTATCACTGCTACCACATTTTCTGCGCGGCGTAGTGGAAGATTGCCTGTGAAAGGTTCCAAGCCATCAGGTATCGGGTTACACTTAAATAGCATTGTAAATGCTATGCCCCATGGCCGCGACGCGTTTACAGGTATGAGACTAGCAGAGGGTTGTACAGGTTTACAAGACGGGAAGTCTGTAAATTTACTTAGCTGTCGCGATGCTGAGGACTTTAAGAGGGGCTTACCTTCATCAAACATGGACGAGCAACCATCAGTTGGCAGTGAATGTGAGAGGTACGAAACGAATGCTTCAATAACTGCGGATTCTCTCCCCTCTGAGTTTCCGAGCTCTACAGAACCTGCAAATTTGTCAGCACACGTTGAGCATCCAGCAAGTGTCCAAGATGAGAGAAAATTAAGCTCTGTTGGTGATGGAAAATTTGAGGATTCCAATCAAACAAGCCCCAAAAAGAAAAAGAAGAGAACATCAAACCCCACTGATGACGACGGTTGTAAAAGGTGCAACTGTAAGAAGAGTAAATGTTTAAAACTTTACTGTGATTGTTTTGCAGCGGGATTATTTTGTGCTGAGTCTTGTGCTTGTCAAGACTGCTTTAATAGACCAGAACATGGAAGTTTGGTTCTTGAGACAAGGCAGCAAATAGAAACCCGTAACCCACTTGCATTTGCCCCCAAGATTGTGCAGCATGTTACTGATATCCCTTCAAATAATATGGATGATGCCAATATAACGACACCATCATCGGCAAGACATAAACGAGGCTGCAACTGCAAAAAGTCAATGTGTCTGAAAAAATATTGCGAATGTTATCAGGCTAATGTCGGATGCTCCAGTGGATGTCGATGCGAGGGATGTAAGAATGTCTACGGCAGGAAAGAAGATTACGTTGCCGTTGAACATGCTTTGAGTGAAGAAAGGAGAAACAGAGCAGAAGAAGGATTAAATAGCAATAGCACTGTTCACAGTAAGCTGGAAACGGAGGCAAAGAAGACGGATTTGTTACATGGAGAGTTATATGATCTGCACTGCCTTTCTCCTCTAACACCGTCTTTGCAACACTCAGACCAAGGAAAGCAAGCTGCAAATTTAAGAGCTCCTTCTGGGGAATATCTTCCGGCCACAGAGATGATAAGAAATGCCTCTTATGATCGGCAACAAGATAGCAACAACATGGAAACAACGGATCAGTCATCGCCAAGATGTAATTCAGTTGCCAAAGGAGGCCAGCTCATTATTTCTAATTCTCAGTCAATATCTGGTGCTTCATTCTCAACTAAAACAAGGGATCAGACGCATATTCCCCTTGTTCTATCCGGCGGTTCCCTTCGGTGGCGTAGTTCACCAATCACCCCAATGACTAAATTAGGCGAAACTAAATCTCTGCAATGTCTTGAATCGGATAGCAGACTTTATGATATTCTAGAAGATGAAACTCCTGAGTTGTTGAAGGAAGCTTCTACTCCGATTAAGTCGGTGAAAACAAGTTCCCCTAAGCAGAAACGAGTTTCTCCTCCGCACAGTCATCTACGTGAACTTGGTTCAAGCTCTTCAGGAGGCTTAAGAACTGGCAGGAAATTTATATTGAAAGCTGTACCTTCTTTCCCACCGCTGACCCCATGCATTGCTTCGAAAGCCAATGATCATGAGAAGTCAGAGAACAGCAGGCAAGTGACCGACGATCCCAAAACCTGA 2772 0.4387 MIMDSPAATKKTPISVATADAAASSESPPVQESPFFSFVNNLSPIKSVKASRVAQDFLGLNSPPVVFTSPRINPHRGSKFLEERPQCSQSAAVEISQSVNGGKSLADNPVDSDKSTFLSLGFITDSKRNYSNTQHCGSSLCVESVDEYLADPSDIDHTPSGHSVNPDVKQSNENVGSSLNDLTHSKKAQSKVDDKNGPGDQMNEPLILLEESEASYQEKPGLVDEARKVEGEKAVEWPSQECAKLESILSSDHVFEKQRSDDSIVQDWVIVQSQSRAFLCWISSCCHHQKHRGLRRRCLQFEEVASSVFGNSNSSPLQAHVPEDLIPSANSSDSKALEASDVALNDTSGETRMAKQPKPITATTFSARRSGRLPVKGSKPSGIGLHLNSIVNAMPHGRDAFTGMRLAEGCTGLQDGKSVNLLSCRDAEDFKRGLPSSNMDEQPSVGSECERYETNASITADSLPSEFPSSTEPANLSAHVEHPASVQDERKLSSVGDGKFEDSNQTSPKKKKKRTSNPTDDDGCKRCNCKKSKCLKLYCDCFAAGLFCAESCACQDCFNRPEHGSLVLETRQQIETRNPLAFAPKIVQHVTDIPSNNMDDANITTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVYGRKEDYVAVEHALSEERRNRAEEGLNSNSTVHSKLETEAKKTDLLHGELYDLHCLSPLTPSLQHSDQGKQAANLRAPSGEYLPATEMIRNASYDRQQDSNNMETTDQSSPRCNSVAKGGQLIISNSQSISGASFSTKTRDQTHIPLVLSGGSLRWRSSPITPMTKLGETKSLQCLESDSRLYDILEDETPELLKEASTPIKSVKTSSPKQKRVSPPHSHLRELGSSSSGGLRTGRKFILKAVPSFPPLTPCIASKANDHEKSENSRQVTDDPKT 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5650g00053 923 SMART CXC_2 610 651 IPR033467 -
Pral5650g00053 923 SMART CXC_2 522 563 IPR033467 -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 842 881 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 905 923 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 1 32 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 483 523 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 158 185 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 18 32 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 151 203 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 437 476 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 894 923 - -
Pral5650g00053 923 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 3 904 IPR044522 GO:0003700
Pral5650g00053 923 MobiDBLite consensus disorder prediction 848 862 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 430 523 - -
Pral5650g00053 923 MobiDBLite consensus disorder prediction 743 764 - -
Pral5650g00053 923 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 525 560 IPR005172 -
Pral5650g00053 923 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 613 647 IPR005172 -
Pral5650g00053 923 ProSiteProfiles CRC domain profile. 523 650 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5650g00053 Pral-Chr5650 225539 231288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5650g00053 502 653 CPP Transcription Factor Family AT3G22760 62.092 7.58e-60 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pral5650g00053 TCR 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5650g00053 K21776 - qsa:O6P43_019426 812.757