Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5650g00013 ATGGAGCTTCAGTTAGGTCTGGCTCTCCCGACTCAGAATCCTATATTCAACCCAACCAACTATGGCTTGGAGTGTTCAGAGTTAAGGAGGCCCGGCTTCTGTATTGAGAGCCGCGGGCATGTAAAAAACAAGCGCAGCTTTGAAGAGTCATTCGGACATTCTTCGAAAACTCTGCCTTTACTGGTATGGAACGGACAGCCAAACGAAGAAGATAACCGAGGTGGGAAGAGAAACAGAAACACTCATCCGGAAAACGAGACTAACGAAGAAGAAAACCGTTTGGTGGGATGGCCCCCAATTAAATCATGGAGGAAGAAGAAAATCCATCAGCAACATCCAAGAGTCCCGATCAGAAACTATAGGATGCTAGCTGAGAATGGAAATAGAGGATCAAACTCTTTGTTTGTTAAAGTTAAGATGGAAGGAGTAGCCATAGGACGGAAGATCAATTTGAGGCTTTACAGCTCTTATGAGACTCTTACAAATGAGCTAATTAGCATGTTTAATAAATACCAGAAACCCGAGGAAGATAAGGCAAATTATACACTTACGTATCAGGACGAAGAAGGGGACTGGCTGGTTGCTGGCGATGTTCCCTGGCAATCCTTCATTGACTCCGCTAAACGCTTGGAGATAGTAAGGAGTGGCGTTGAAGAATCCACTTCCAGCAAATAG 675 0.4459 MELQLGLALPTQNPIFNPTNYGLECSELRRPGFCIESRGHVKNKRSFEESFGHSSKTLPLLVWNGQPNEEDNRGGKRNRNTHPENETNEEENRLVGWPPIKSWRKKKIHQQHPRVPIRNYRMLAENGNRGSNSLFVKVKMEGVAIGRKINLRLYSSYETLTNELISMFNKYQKPEEDKANYTLTYQDEEGDWLVAGDVPWQSFIDSAKRLEIVRSGVEESTSSK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5650g00013 224 ProSiteProfiles PB1 domain profile. 133 220 IPR000270 GO:0005515
Pral5650g00013 224 SUPERFAMILY CAD & PB1 domains 129 212 - -
Pral5650g00013 224 Gene3D - 128 223 - -
Pral5650g00013 224 MobiDBLite consensus disorder prediction 70 91 - -
Pral5650g00013 224 MobiDBLite consensus disorder prediction 58 93 - -
Pral5650g00013 224 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 215 IPR003311 GO:0005634|GO:0006355
Pral5650g00013 224 Pfam AUX/IAA family 40 215 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5650g00013 Pral-Chr5650 72497 73919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5650g00013 116 215 B3 DNA Binding Superfamily AT3G61830 36.000 4.39e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral5650g00013 AUX_IAA 5.8e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5650g00013 K14484 - gmx:100802759 243.432