Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5648g00011 ATGGCTCGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCATTGGGGCTCCTGGGTCTCCGAAATCCGCCACCCTCTTCTGAAGACAAGAATATGGCTGGGGACGTTCGAAACTGCGGAAGATGCAGCTAGAGCGTACGACGAAGCAGCGAGGCTTATGTGTGGAACAAAGGCAAGAACTAATTTTCCGTTTAATCCCAATGAGCCACAGTCGTCTTCTTCCAAGTATCTCTCTGCAACTTTGACGGCGAAGCTTCACAAGTGCCACATGGCTTCGCTCTCACTTCAAATGGCCAATAAGCAGAAACAGCCACAGCAACAAGAACCACCTCAGAGGCCTAACTATAACCACCATAACTACCCATGTGCCTCCAGCAATGGCATTGTCGGAACGAGTTCCGACGCGGGATTCCGGTGGCCGGAGATGAGACCTGAGGAATCCCAATGGGTGGTAGAAGGCCAGGGAGAAGAAGTTGGGCCAGTACTTGAAGATGATCACATAGAGCAAATGATTCAGGAGTTGCTTCATTATGGCTCCGTCGAGCTCTGCTCTCTTGGCTCAGCCTAG 570 0.5211 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPFNPNEPQSSSSKYLSATLTAKLHKCHMASLSLQMANKQKQPQQQEPPQRPNYNHHNYPCASSNGIVGTSSDAGFRWPEMRPEESQWVVEGQGEEVGPVLEDDHIEQMIQELLHYGSVELCSLGSA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5648g00011 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pral5648g00011 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Pral5648g00011 189 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pral5648g00011 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 111 - -
Pral5648g00011 189 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Pral5648g00011 189 MobiDBLite consensus disorder prediction 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5648g00011 Pral-Chr5648 113248 114424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5648g00011 1 186 AP2-EREBP Transcription Factor Family AT5G25190 60.317 3.32e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5648g00011 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5648g00011 - - gmx:100777851 253.447