Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5638g00003 ATGTCCCTGAAGCAGGATTTGATGATTATTAGCCATATCCAAGCCATGTCAATACTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCCATCGATCAGAGAACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACATGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAGAACCCCATTCATGAGGATGACTATGCTCCTGAGGCATTGGAGCCTTCCCTAGTTCGAGAAGAATATGCTCCTGTCGTTTTTGCACAGGATACAATTTCCCATGTTATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTTTTGCGTGCCAGAGAGTTAGGGAAAGGAGTTTTAACCGCTCCTTTTAGGCTACTCAAAACAAATCATCTTGGAGTTATCCTCACCTTTGCAGTTTACAACACAGATCTTCCATCAAATGCAACCTCAAATGAAAGGATTCAAGCAACAAATGGGTATCTTGGTGGCGTCTTTGATATTGAGTCATTGGTTGAAAAATTACTTCAACAACTAGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCGATTCCAATGTATGGTTCAAACGTATCAGATGATGGATTCTATCATGTTAGTTCCCTGAACTTTGGAGATCCTTTTCGGAAGCATGAGATGCACTGTAGGTTCAAACAGAAACCTCCGTGGCCCTGGTTGGCAATAGCCACATCAATTGGCATCCTTGTTATTACGCTCCTTGTGGGTCATATTTTTCATGCTACTGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGTAGCTGATGTTGCCAAATCCCAGTTTCTGGCCATCGTTTCTCATGAGATCCGAACACCAATGAATGGTGTTCTTGGAATGTTGCACTTGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTATCGCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATACGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAGGGAGTAGAGTTGGCAGTGTATGTCTCAGATAAGGTTCCTGAACTGCTTGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGACGTTGTCAATTCCATCGAAGTTGCAACAGCAAAGAATACCCTGAGTGGCTTTCCTGTTGCTGATAGATGTCAAAGTTGGAAAGGATTCAATTCTGTTGGTCAAGAAGGACCTCTGGGTTCTTTCTCATCTTCCTCTTCTGATCGCATTACTCTCATTGCATCTGTTGAAGATACAGGCGAAGGAATTCCTCAAGAAGCCCAATCCCACATCTTCACTCCATTCATGCAGGTTGGTCCTTCTGTCTCCAGAAAACATGGGGGAACAGGTATTGGGCTGAGCATCAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTGAGCTGTCCAAAGATTGAATCTACTTTCACATTTACTGCTGTCTTCAATGAATCCCCTATTTCAACTGATGGTAAAACTCAGCAAATTAAGAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACCACACTTGTTATAGACCCTAGACCTGTCAGAGCTGAAGTGTTGAGGTATCACATTAAACGGCTTGGCATTCATGTTCAAATAGCTTCGGATTTAAATCAAGGTTTGTCTGTCATAAGCAAGGGGGATATGGTTATCGATATGATCTTAGTTGAGCACAAAGTCTGGGATGGAGATTCTGGTGTTTCATCTCAATTTATCGGTAAGATGAGGAAAATTGACGGCAGGGATCCTCCAAAGCTGTTCGTTCTTGTTAATTCTAGCAGCTCTTCCAGAACAAGTTCCATAACATTGGGTGTCAATAATCCAACTGTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACATTACAGCGAGCCTTGGGGGTGGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCTGCCATCTTTTGCGTGGGAGAAAAATCCTCATTGTAGACGACAATAGTGTGAATCGAATAGTAGCAGCTGGTGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCTCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTAGGATGATTCGGGAGATGGAACGTGTAAACAGAGGAGAAGTGCCCGTGGAAACCTTGGAAAATACTTCAAACTGCCACATGCCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACGCAAGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCAGGAAGTTTCACGGTGTTTCCAATCCACTTCATGA 2694 0.431 MSLKQDLMIISHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQHGWTIKRMDTLEQNPIHEDDYAPEALEPSLVREEYAPVVFAQDTISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATSNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVITLLVGHIFHATVNRIAKVEDDYREMMELKKRAEVADVAKSQFLAIVSHEIRTPMNGVLGMLHLLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAVLDDVLSLFSEKSQEKGVELAVYVSDKVPELLVGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLIEDVVNSIEVATAKNTLSGFPVADRCQSWKGFNSVGQEGPLGSFSSSSSDRITLIASVEDTGEGIPQEAQSHIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFXSCPKIESTFTFTAVFNESPISTDGKTQQIKNQPNLASSEFQGMTTLVIDPRPVRAEVLRYHIKRLGIHVQIASDLNQGLSVISKGDMVIDMILVEHKVWDGDSGVSSQFIGKMRKIDGRDPPKLFVLVNSSSSSRTSSITLGVNNPTVIVKPLRASMLAATLQRALGVGNKGNPRNGELPSLSLCHLLRGRKILIVDDNSVNRIVAAGALKKYGADVVCVNSGKDAISMLKPPHQFDACFMDIQMPEMDGFEATRMIREMERVNRGEVPVETLENTSNCHMPILAMTADVIQATQEECLKCGMDGYVSKPFEAEQLYQEVSRCFQSTS 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5638g00003 898 Pfam His Kinase A (phospho-acceptor) domain 315 380 IPR003661 GO:0000155|GO:0007165
Pral5638g00003 898 PRINTS Bacterial sensor protein C-terminal signature 530 540 IPR004358 GO:0016310|GO:0016772
Pral5638g00003 898 PRINTS Bacterial sensor protein C-terminal signature 512 526 IPR004358 GO:0016310|GO:0016772
Pral5638g00003 898 PRINTS Bacterial sensor protein C-terminal signature 547 565 IPR004358 GO:0016310|GO:0016772
Pral5638g00003 898 SUPERFAMILY CheY-like 758 894 IPR011006 -
Pral5638g00003 898 CDD PRTases_typeI 714 790 IPR000836 -
Pral5638g00003 898 ProSiteProfiles Response regulatory domain profile. 762 894 IPR001789 GO:0000160
Pral5638g00003 898 CDD HATPase_EvgS-ArcB-TorS-like 432 585 - -
Pral5638g00003 898 Pfam Response regulator receiver domain 763 890 IPR001789 GO:0000160
Pral5638g00003 898 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 584 IPR003594 -
Pral5638g00003 898 Pfam CHASE domain 31 227 IPR006189 -
Pral5638g00003 898 CDD HisKA 315 376 IPR003661 GO:0000155|GO:0007165
Pral5638g00003 898 Gene3D - 603 737 - -
Pral5638g00003 898 Gene3D - 379 588 IPR036890 -
Pral5638g00003 898 Gene3D - 7 31 - -
Pral5638g00003 898 ProSiteProfiles Response regulatory domain profile. 614 736 IPR001789 GO:0000160
Pral5638g00003 898 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 300 381 IPR036097 GO:0000155|GO:0007165
Pral5638g00003 898 ProSiteProfiles Histidine kinase domain profile. 322 587 IPR005467 -
Pral5638g00003 898 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 369 582 IPR036890 -
Pral5638g00003 898 SUPERFAMILY CheY-like 609 737 IPR011006 -
Pral5638g00003 898 SMART REC_2 761 890 IPR001789 GO:0000160
Pral5638g00003 898 Gene3D - 754 895 - -
Pral5638g00003 898 SMART HKATPase_4 427 587 IPR003594 -
Pral5638g00003 898 CDD REC_hyHK_CKI1_RcsC-like 763 890 - -
Pral5638g00003 898 Gene3D - 283 378 - -
Pral5638g00003 898 FunFam Histidine kinase 4 32 261 - -
Pral5638g00003 898 ProSiteProfiles CHASE domain profile. 28 254 IPR006189 -
Pral5638g00003 898 Coils Coil 292 312 - -
Pral5638g00003 898 FunFam Histidine kinase 4 287 378 - -
Pral5638g00003 898 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 889 - -
Pral5638g00003 898 SMART CHASE_2 28 229 IPR006189 -
Pral5638g00003 898 SMART HisKA_10 315 380 IPR003661 GO:0000155|GO:0007165
Pral5638g00003 898 Gene3D CHASE domain 32 261 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5638g00003 Pral-Chr5638 9122 13827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5638g00003 10 898 Miscellaneous Gene Families AT1G27320 69.145 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5638g00003 CHASE 1.2e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5638g00003 K14489 - gmx:100776798 1402.88