Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5624g00004 ATGGAATATGATGAATTCATCGACCCAACTGATCAATCTTCTCAAGGTGCTTCGTCGGAAAGATACCTGCTTGGCTTCGTCTGCGCCCACATCGTTGGGGTTAAGTACTATTCGGGCACCATCAGTGGCCGTGAAATGGTTGGTCTGGTCCGTGAACCTCTCAACCCCTACGATGAGAACGCCATTAGGGTCCTCAACACTAGAGCAACTCAGGTTGGGCATATTGAGCGCTCCGTCGCTGCCGTACTGTCTCCCTTGATAGACTCCGAGCTCATCATTGTGGAAGGCATTGTGCCCAAAACGTACTCTGGTAACAAATTCAAGATTCCTTGTCAAATTCATATATTTGCGACGATTGAGGCTTTTCCAACCGTGAAAGACGTGATTTCAGACGCTGGGTTAGCTTTAATTTTAGTGTCTGATGCAGCTTCTACGTTGTCAGAGTCTATGGCTGTGAAAGAAAGGAAGGCTAAGAATGATTTTAAGAGTGTAGATGAGATTTTTAAGTTGGTTGATGAGAATTTTAGCAAAAAGGGTATATTGGAAGCTTTGGAGCCTCCTCGAAGTGTCATCAAGTCTAATCTTTTCCTACATCAGAAGGAAGGCTTGGGGTGGTTAGTTCATCGAGAGAATTCTGGTGAATTGCCGCCATTTTGGGAAGAGAAAGATGGAGCCTTTGTGAATGTTTTGACTAATTATCATACGAACACAAGGCCAGAGCCTTTGCGAGGTGGTATTCTAGCAGATGATATGGGATTAGGCAAGACCTTAACTTTACTTTCCTTAATTGCTCTTGATAAAGATTCTATTTCTCTAAATACGGAAGAAGGGAAGCATGATGAAAATGGGGGGCGCAATGAAGGATTCGCTGTCTCAAGTGGTAAGAAGGGTAAGAGGAGAGGAACAAATAAACAGATCACTGGATCAGAAAAAAAACGCAAGACTGAGAGTACTTCTTCAAGGGGCCATGTAAAAGGAAAATCTGTTGCTGCAGATGTCACACCTTCAACTGGCATGAATATGAAGACTACCTTGGTTGTGTGCCCCGCTTCTGTAATTTCAACATGGATATCACAGTTAGAAGAACATACTAAACCAGGAACATTGAAGACGTACATGTATTATGGTGATAAAAGGACCGAGGATGCTGAAGAACTTAAGATGTATGATTTAGTATTAACCACATACACGACCTTAGCTACTGAAGAATCTTCTCCAGACTCACCCATAAATAAAGTATATTGGTGGAGGGTCATTTTGGATGAAGCACATGTAATCAAAAATGTGAATGCTAAACAAAGTCAAGCTGTCATGAAAATTGTAGCTGAGCGGAGGTGGGCTGTTACAGGGACACCAATTCAAAATGGTTTATATGATTTATTTTCTCTCATGGCATTTTTACGCTTTCAACCATTTTCAACAAAGAGTTATTGGCAGAGCTTGGTGCAGCTTCCTCTTGTTGAAAGAAACCCAAACGGACTCTTACGTCTTCAGGTCTTGATGGCAACAATTTCATTGCGAAGAACGAAGGATAAAGCATTGGTGGGATTGCCTCCAAAAACTGTAGAGACTTGTTTTGTGGAACTTCTTGAGGAAGAACGGAAACTATATGATCAGATAGAATCGAGAGCAAAGAACATAGTGGCAGGTTATTTTAATGACGGAAGCATAACGCGCAACTATTCCACTGTACTTGGTATAATTTTACGGCTTCGACAAATTTGTACTGATATGGCATTGTGCCCATCAGATATCAAATCTTTACTCCCTTCTAATAGCATCGAAGATGTTTCCAATAACCCGGAATTGCTGCAAAAGTTGGTAGAGGTGCTGCAAGATGGTGAAGATTTTGACTGTCCAATATGTATTTCTCCGCCAACGGATATTGTAATTACATGCTGTGCTCACATATTCTGCCAAGCTTGTATTCTGAAAACCCTACAGCGGAGCAAAGCCTGTTGTCCCCTTTGTCGTCACCCCCTCAACGAATCTGACTTGTTCTCCGCCCCACCTCAATCTTCTGATGCTGATGCTGCTGGACTCTCTTCGGACAAGACAAGCTTATCCTCTAAAGTATCTGCTCTGGTGAAACTTCTTGTTGCCTCAAGGGATCAACATCCATCTGCAAAATCAGTTGTGTTTTCTCAATTTCGTAAGATGCTGATCTTACTGGAACAACCTCTGAAGGCAGCTGGTTTCAAGACACTGCGCCTTGACGGGACCATGAATGCTAAACGAAGGGTTCGAGTTATGGAAGAATTTGCAGCTGGAGGAACAGATGAACCCATTGTTCTACTGGCAAGCCTCAAGGCTACAGGCACAGGTATAAATCTGACAGCCGCCTCCAGAGTATACTTATTGGAGCCATGGTGGAACCCAGGAGTGGAGGAACAGGCAATGGATCGTGTGCACCGCATTGGACAGAAAGAGGAGGTGAAGATTGTAAGATTGATTGCTAAAAACAGCATTGAAGAGAGGATATTGGAGTTGCAAGAGAAGAAGCAGCAGCTTGCAAAGGAAGCGTTTGGAAAGAGGAAAGCAAAGGACGGTAGGGAAGTTGGAGGGGATGATTTCCGAATGCTCTTGTCCTTGTGA 2595 0.432 MEYDEFIDPTDQSSQGASSERYLLGFVCAHIVGVKYYSGTISGREMVGLVREPLNPYDENAIRVLNTRATQVGHIERSVAAVLSPLIDSELIIVEGIVPKTYSGNKFKIPCQIHIFATIEAFPTVKDVISDAGLALILVSDAASTLSESMAVKERKAKNDFKSVDEIFKLVDENFSKKGILEALEPPRSVIKSNLFLHQKEGLGWLVHRENSGELPPFWEEKDGAFVNVLTNYHTNTRPEPLRGGILADDMGLGKTLTLLSLIALDKDSISLNTEEGKHDENGGRNEGFAVSSGKKGKRRGTNKQITGSEKKRKTESTSSRGHVKGKSVAADVTPSTGMNMKTTLVVCPASVISTWISQLEEHTKPGTLKTYMYYGDKRTEDAEELKMYDLVLTTYTTLATEESSPDSPINKVYWWRVILDEAHVIKNVNAKQSQAVMKIVAERRWAVTGTPIQNGLYDLFSLMAFLRFQPFSTKSYWQSLVQLPLVERNPNGLLRLQVLMATISLRRTKDKALVGLPPKTVETCFVELLEEERKLYDQIESRAKNIVAGYFNDGSITRNYSTVLGIILRLRQICTDMALCPSDIKSLLPSNSIEDVSNNPELLQKLVEVLQDGEDFDCPICISPPTDIVITCCAHIFCQACILKTLQRSKACCPLCRHPLNESDLFSAPPQSSDADAAGLSSDKTSLSSKVSALVKLLVASRDQHPSAKSVVFSQFRKMLILLEQPLKAAGFKTLRLDGTMNAKRRVRVMEEFAAGGTDEPIVLLASLKATGTGINLTAASRVYLLEPWWNPGVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEERILELQEKKQQLAKEAFGKRKAKDGREVGGDDFRMLLSL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5624g00004 864 CDD RING-HC_HLTF 614 666 - -
Pral5624g00004 864 SUPERFAMILY RING/U-box 603 664 - -
Pral5624g00004 864 Coils Coil 820 840 - -
Pral5624g00004 864 MobiDBLite consensus disorder prediction 274 335 - -
Pral5624g00004 864 SMART HIRAN_2 24 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral5624g00004 864 ProSitePatterns Zinc finger RING-type signature. 634 643 IPR017907 -
Pral5624g00004 864 ProSiteProfiles Zinc finger RING-type profile. 619 658 IPR001841 -
Pral5624g00004 864 SMART ring_2 619 657 IPR001841 -
Pral5624g00004 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 685 IPR013083 -
Pral5624g00004 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 854 IPR001650 -
Pral5624g00004 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 851 IPR027417 -
Pral5624g00004 864 Pfam Helicase conserved C-terminal domain 691 807 IPR001650 -
Pral5624g00004 864 Pfam Zinc finger, C3HC4 type (RING finger) 619 657 IPR018957 GO:0046872
Pral5624g00004 864 SMART helicmild6 722 807 IPR001650 -
Pral5624g00004 864 CDD SF2_C_SNF 688 818 - -
Pral5624g00004 864 Gene3D - 326 509 IPR038718 -
Pral5624g00004 864 Pfam SNF2-related domain 198 578 IPR000330 GO:0005524|GO:0140658
Pral5624g00004 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 236 470 IPR014001 -
Pral5624g00004 864 MobiDBLite consensus disorder prediction 303 321 - -
Pral5624g00004 864 Gene3D - 169 281 IPR038718 -
Pral5624g00004 864 Gene3D - 518 863 IPR027417 -
Pral5624g00004 864 SMART ultradead3 191 482 IPR014001 -
Pral5624g00004 864 Pfam HIRAN domain 25 103 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral5624g00004 864 Gene3D - 16 136 - -
Pral5624g00004 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 499 IPR027417 -
Pral5624g00004 864 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 149 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5624g00004 Pral-Chr5624 28932 32939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5624g00004 4 864 RAD5 or RAD16-like Gene Family AT5G05130 63.605 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5624g00004 SNF2_N 3.4e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5624g00004 K15711 - vvi:100263696 1159.82