Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5623g00002 ATGACCATGAAGTCCGGGTCACTAGAATACTGGAGGAATTACTTTCGAGCTGCAAACTCTGATATATTCGATATAATTGACCACGCGATCATGGTGGCGGTTTCCGATTGTCCGAAAGAATTTAGATTACGAAGAGACGGAATTGCGGAACGTTTGTTTTCTTGTAGATTGAATCGTTGTGTGGGGTGTGATCGATTGGAGTTGGCGGTTTCCGGTGATGATGAGGGAGATGGGGGTTGTAAGAGTGGTTTTGATCGAGATGCTACTGAATTGGAAGCAGGAGCTAGTAAAGAAAGCAAGGTCCATAGTAGCAGAGACGATCATGGAGAGATGAACAGGAACCAAGTTGGCAATTTTAGTTTTGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAGATGGTTGGGGAGGTTTTGAGGATCAAAGAGGTTCTCCATAACAGCAAGGAAGAGCCTGACTCAGTGTTATTCGAGTCGTTGAGGAGGCTCCAGCTGCTGGCACTGACCGTGGATCTTCTTAAGGGAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAGCACGGATCAAAGGAGATTCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAAGAAATGGTAGATGAATGGGTCAAGTCCACAGCTGCTATAGCAGGGTCAGCAGAAGGAACCCCAGATTCAGTTGATCCATCAGTCGTTGATGAAGAGGAGGGGCTTCCTTCACCTCCTATGGATGAAGGGGCTTTTCTTGCAGCTCCAACTGGTCCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATTTTCGACAAAGTGGGGAATTCATCAAGACTCGAGAACACATCAGAAAACTATCTATGGACAGTCAAAACGTTGCAAAGAGAAAACCACAGGCTTCCAGTGAGGCCAAGGAGAGTAATTGTCATCAAATGAAGAAAAATGAGGTTGCTATGAGACAGAGTAAACCGGTCTGCACTGATTCTGGCCCTGGCAGGCCACCAAGGTCCAGCTTGCAGCAAAAAACCAACGCAGGACCAAAGATGCAGCAGAAACAAGAGAAGAGTGCTATCCCAAAAAGGCCTCTTGTTGCACAGCAAGATAAATTCAAGTGTTCAGATGATGTTTCAGTCCAAGTGAAACTAGAAGCCACTAAGAGGAAACTTCAGGAGTCCTATCAACAGGCTGAAAATGCCAAGAAGCAACGAACAATACAGGTTATGGAGTTGCATGATCTTCCAAAGCAAGGGAATGGCCACCGAAATCCACACTTCAAGCCTGGGAATCTCAACAAGCACTGGGCTCACGGACGAAGATAG 1338 0.4611 MTMKSGSLEYWRNYFRAANSDIFDIIDHAIMVAVSDCPKEFRLRRDGIAERLFSCRLNRCVGCDRLELAVSGDDEGDGGCKSGFDRDATELEAGASKESKVHSSRDDHGEMNRNQVGNFSFGEAEALTDEIEEESQMVGEVLRIKEVLHNSKEEPDSVLFESLRRLQLLALTVDLLKGTEIGKAVNPLRKHGSKEIRQLARTLIDGWKEMVDEWVKSTAAIAGSAEGTPDSVDPSVVDEEEGLPSPPMDEGAFLAAPTGPMELSQFFDGMDDDGNFRQSGEFIKTREHIRKLSMDSQNVAKRKPQASSEAKESNCHQMKKNEVAMRQSKPVCTDSGPGRPPRSSLQQKTNAGPKMQQKQEKSAIPKRPLVAQQDKFKCSDDVSVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGNGHRNPHFKPGNLNKHWAHGRR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5623g00002 445 MobiDBLite consensus disorder prediction 419 445 - -
Pral5623g00002 445 SMART TFS2_5 138 213 IPR003617 GO:0005634
Pral5623g00002 445 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 222 IPR035441 -
Pral5623g00002 445 Coils Coil 385 412 - -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 91 115 - -
Pral5623g00002 445 ProSiteProfiles TFIIS N-terminal domain profile. 139 214 IPR017923 -
Pral5623g00002 445 CDD TFIIS_I 140 212 - -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 339 357 - -
Pral5623g00002 445 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 223 IPR035441 -
Pral5623g00002 445 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 433 IPR044805 -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 91 112 - -
Pral5623g00002 445 Pfam TFIIS helical bundle-like domain 163 211 IPR017923 -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 222 245 - -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 293 372 - -
Pral5623g00002 445 MobiDBLite consensus disorder prediction 305 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5623g00002 Pral-Chr5623 9298 12986 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral5623g00002 Med26 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5623g00002 - - gmx:100775579 648.662