Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5621g00012 ATGGACAGTAGTTTCTCTTCTCCGCGACGCGACGCTTTTCCTGCTGGTCTGCGAGTTCTCGTCGTTGATGATGATCCAACATGGATAAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACCACATGCGGCTTAGCAAGGGAGGCTCTCAACTTGCTTCGCGAAAGGAAAGATGGATACGACATTGTTATTAGTGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTGGAGATGGATCTTCCTGTCATAATGATGTCTGTAGATGGAGAGACTAGCAGGGTTATGAAAGGTGTTCAACATGGAGCATGCGATTATCTCCTCAAGCCAATTCGAATGAAAGAACTACGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCAAGAGAATTTGAAGGTCATGAAGGATTTGAGGGCCTTCATTTAATGAGAAATGGATCAGATCTGTCGGAAGATGGGATGTCATTTGCCCTTGAAGATATGAATTCCATGAGGAAACGAAAAGACTTTGATAGCAAACATGATGACAAAGAATTTGGAGATCCATCTTCCACCAAGAAAGCCAGAGTAGTCTGGTCTGTGGATCTTCATCAGAAATTTGTCAAAGCTGTGAACCAAATTGGATTTGACAAAGTTGGCCCCAAAAGAATTCTGGATTTGATGAATGTTCCTTGGCTGACGAGAGAAAATGTTGCTAGCCATTTGCAGAAATACCGGCTCTACTTGAGTAGATTGCAGAAAGAAAATGAACAGAGATCTTCCTCAAGTGGGAGCAAGCGTTCAGATTTGCCTCCAAGAGACACTGCTGGAAGTTTTGGATTTCAGAACACAACAAACGGGCAGCAAAACGATGTTGCAGTTGACAGCTACAAATATTCAGATGTAACATTACAGAGTCATACCTCTGAGACCAAGATTCACAACGGTGATCTCAAGGCAACTGTTTCAGATTCTGCAGAAGAAAAAAGAACTTTGTCTGGAAGCATTCCTGATACAAAAGTAAGTTCCCAGATAAATCTTAAGCATTCTTCTTTTGGACCCCTTGAGTCAGAAGGAAGCCATGCAGTATTTGATTGCACCGTCCCATCGACACAGTACACCTGGAATGAAACTCCAGAGATGCCGCTCAAGAAAGAACACAAGTCATTTCTTCAATTGGAAGATAGCTTCAGTCATTTACCCTTGCATGTCCCGCAGCATCCAGTCCAGGTTGACCAATCACATTCAATTGCTTCAGTTAGTTCCAACCCCTCTATCACAGAGGGAGAGATTGCTGCCTCCATTGAAACTAAGCCAATGTATACTGATCACAAAAGTGACTATGCCAGTCCTGTGAGTTCAATAGGGAGTGTAGTGGACAACTTTCCTACACAGTCCAAGAGCCTTATGGAGAATGGTCAACTTTCAGAACCCACTTCAACTAAGAATTTGGACATGAAAACTCAGGGCATCAATCTAGGCATCAATTCTGACCTGGCTTTTTATCCCGAAAACCTAGTTTTGGGAGGTGAGGTGGCTTCGCTACCACTGGACGAGGACTTGCATTTCTATTGGCTGCATGGTGAATGCTATAATATGAACTGGGGATTGGAAAATATAGGAATGCCAGAGTATTATGATCCAGGTCTTGTTGCAGAACTTTCAAGTCACCTACATGATTCAGCAGATTATACTGTAGTAGATCAAGGCCTATTCATAGTATAG 1740 0.427 MDSSFSSPRRDAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEGLHLMRNGSDLSEDGMSFALEDMNSMRKRKDFDSKHDDKEFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENEQRSSSSGSKRSDLPPRDTAGSFGFQNTTNGQQNDVAVDSYKYSDVTLQSHTSETKIHNGDLKATVSDSAEEKRTLSGSIPDTKVSSQINLKHSSFGPLESEGSHAVFDCTVPSTQYTWNETPEMPLKKEHKSFLQLEDSFSHLPLHVPQHPVQVDQSHSIASVSSNPSITEGEIAASIETKPMYTDHKSDYASPVSSIGSVVDNFPTQSKSLMENGQLSEPTSTKNLDMKTQGINLGINSDLAFYPENLVLGGEVASLPLDEDLHFYWLHGECYNMNWGLENIGMPEYYDPGLVAELSSHLHDSADYTVVDQGLFIV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5621g00012 579 SMART REC_2 17 129 IPR001789 GO:0000160
Pral5621g00012 579 MobiDBLite consensus disorder prediction 320 342 - -
Pral5621g00012 579 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Pral5621g00012 579 SUPERFAMILY CheY-like 16 140 IPR011006 -
Pral5621g00012 579 FunFam Two-component response regulator 17 173 - -
Pral5621g00012 579 MobiDBLite consensus disorder prediction 259 274 - -
Pral5621g00012 579 CDD REC_typeB_ARR-like 19 133 - -
Pral5621g00012 579 PIRSF RR_ARR_type-B 1 521 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pral5621g00012 579 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Pral5621g00012 579 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pral5621g00012 579 Gene3D - 17 176 - -
Pral5621g00012 579 MobiDBLite consensus disorder prediction 258 293 - -
Pral5621g00012 579 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Pral5621g00012 579 Gene3D - 195 258 - -
Pral5621g00012 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 303 IPR045279 GO:0009736
Pral5621g00012 579 FunFam Two-component response regulator 195 258 - -
Pral5621g00012 579 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5621g00012 Pral-Chr5621 171817 176048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5621g00012 11 265 Response Regulator Gene Family AT2G25180 55.939 2.42e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pral5621g00012 Response_reg 2.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5621g00012 K14491 - gmx:100797421 796.578