Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5620g00004 ATGGATGGTCTAAGTTGGGATGCCTCACATGCTGTGGAGAACCTGCCCATGTTTTGGAGCAATATAGAACAAGAAGAGCTTGAAGCAAGCTTGAATCCAAGCTTTCCTAATAATCCAATGCAAGAGATGCAGCCTCTAACGGGTCGTCATCATCATCATCTATATGCAAATTCTGGAAAAGGATTGATCAAAGAGATGGTTCAATTATCGGAAGCTGAAGCAGAATTAGCAGCTACTACAAGTTCAAAGACAAATCTGTCACAGCTAGTAGGTGGGTCCAGCTGGGCTGGTGGATCTTACAGTATGAATAACCCATTTGGTAATTTTGATCCTCCAGAATTCAACATGGCCCACCAACATCCACAACTTGTCAATAATGGCTCAAAAAATGGTACCTTCTCTGCTGAGTCACTAGATTGCTTGCTCTCAGCTACAAATAGCAACACAGACACATCTGTTGAAGATGATGGAGTCTCCATGATCTTATCTGATTGCAGAAGATCAAACTTATGGAGCTTTAATTATAACAATGGAGGAAGTGAATCCGAGAGTACTACTAATGCTACCAATGCTGACCATGAAACATTATCTCAGGGTTCCTCAGATCTTTATGCAAATCAAGCTATAAAAATCGCAGAATCCACCAAGACTAAGTGTTCAAAAAGGAGCATTGATGATGCCTTTGACCAATATCCCTACTTCAACATTGAAGAAGGTGGTTCAAGTTCATTCAGGCTCATTAAAGAGAATGACAACAACAATCCACCAAAACCCAAAAGACCCAGATGGGATTCTAAGCTTCCAACTTCTTCAAACATCAATTTCAAGCAGCCCCATTCATCAACATCATCTTCCATGGAAGAACCAGACCCAGATGCCATAGCACAAATGAAAGAGATGATATACAGGGCTGCAGCGTTTAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAACGTGAGGATATCAACAGATCCTCAAACTGTGGCTGCAAGGCTGAGAAGAGAGAGAATAAGTGAAAGAATTAGGGTTTTGCAGAAATTGGTTCCCGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTAAGGTCACAAGTGAAAGCACTAGAGAGTCTAGGAAGCAGAGTTGAGGCTATGAGTTGTCCTCCTACTAGTATTGCCTACTCTTTTAACCCTTCTTTTCCCAGGCAGTTTAACCCTAGCTACCACATCGAACATTAA 1263 0.4196 MDGLSWDASHAVENLPMFWSNIEQEELEASLNPSFPNNPMQEMQPLTGRHHHHLYANSGKGLIKEMVQLSEAEAELAATTSSKTNLSQLVGGSSWAGGSYSMNNPFGNFDPPEFNMAHQHPQLVNNGSKNGTFSAESLDCLLSATNSNTDTSVEDDGVSMILSDCRRSNLWSFNYNNGGSESESTTNATNADHETLSQGSSDLYANQAIKIAESTKTKCSKRSIDDAFDQYPYFNIEEGGSSSFRLIKENDNNNPPKPKRPRWDSKLPTSSNINFKQPHSSTSSSMEEPDPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVRISTDPQTVAARLRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSRVEAMSCPPTSIAYSFNPSFPRQFNPSYHIEH 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5620g00004 420 Gene3D - 332 394 IPR036638 GO:0046983
Pral5620g00004 420 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 145 405 IPR045843 GO:0003700|GO:0006355
Pral5620g00004 420 MobiDBLite consensus disorder prediction 265 289 - -
Pral5620g00004 420 Pfam Helix-loop-helix DNA-binding domain 337 376 IPR011598 GO:0046983
Pral5620g00004 420 MobiDBLite consensus disorder prediction 245 290 - -
Pral5620g00004 420 SMART finulus 333 382 IPR011598 GO:0046983
Pral5620g00004 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Pral5620g00004 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 391 IPR036638 GO:0046983
Pral5620g00004 420 MobiDBLite consensus disorder prediction 179 199 - -
Pral5620g00004 420 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5620g00004 Pral-Chr5620 67751 69013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5620g00004 127 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.000 1.54e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5620g00004 HLH 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5620g00004 - - gmx:100793830 373.629