Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5620g00002 ATGGAAATGTCAAAGTGTTTCTTCTCTTCTCTCGTAGGTTGTCTGCTTTTTGCAGTTCTGGTTCAATCTCAGGATCAATCAGGATTCATAAGCATAGATTGTGGGATACCTGCAAAATTCACCTATAAAGAGAAGACAACAGGCATAAATTACATATCAGATGAGAAGTTCATAAATTCTGGTGTTAGTAACTCCATAACCAGTGAGCTCCAAAGCATGTATCAACGGCAACTTTGGAACCTGAGAAGCTTTCCTCAAGGAACAAGAAACTGCTACAGAATAAACATCACAAGTGGCTCTAAATATTTGATCAGGGCTAATTTTCTGTACGGGAATTATGATGGCCAAAATGAGTTACCAAGTTTTGATCTTCATCTTGGGCCTAACGTATGGGAAACAGTGGAAATAACCAATGCATCTCTGTTACTAAGCCCTGAGATCATACATGTCCCATCACTAGATTACATACAAATCTGTCTGGTTGACACAGGCTCTGGAACCCCATTTATCTCTGCTATAGAATTAAGGAATTTGATGAACGATACTTATGTTACTCAATCTGGATCCTTGTCACTTTACTCGAGGTTGGATTTAGGCTCAACCAGCAAAAGAAAATACAGATATAGTTATGATATTTATGGTCGCTTCTGGTCATATAAAGCCTACATCCCGGACTGGACGCAAATAAGTGCTTCAATTTCCGCAGATTCCTTGGTTCAAAATCATTACAATCCACCAGCCATTGTTATGAGTAATGCAGCCACACCAGTAAATGAAAGTGCTCCAATGTTAGTGTGGTGGGAGCCCAAAAATGCAACAGACCAATTCTATGTTTACATGCATTTTGCAGAGCTTCAAGTCTTGGAAAAGAATCAGACAAGATCATTCACCGTTACCCTCAATGGCGATCTCTTCTATGCTGATCTTGTGCCTCAGTACCAAGTCACAACCACTTTGTTCAGCAAGTATGCTACCACCGGAGAAAAAATTCAGTTTTTGCTTAAGAAGACTAAGCATTCAACCCTCCCTCCCATTCTCAACGCCATTGAAATTTATACAGTTAAAGAATTTTTGCAGTCAGAAACAGAACAAGAAGATGTTGACGCAATTACAACAATCAAGTCTTCTTATGGGCTGACAAGAAATTGGCAAGGAGATCCATGTAGTCCCGTGGACTACATTTGGGAAGGTCTAAATTGCACTTATAATGGCCAGAATTCCCCAAGAATCACAGCCCTGAATTTATCTTCAAGTGGATTGACAGGACAGATAGATCCTTCCATCTCAAATTTTACCATGTTGGAGAAGTTGGATTTATCAAATAATAGCTTAAGTGGACCAGTTCCAGATTTTCTGTCTCGGCTACAAAACTTGAAGATCTTAAACATTCAGAACAACAACTTCACAGGTACGGTTCCCACTGAGCTGGTTGAAAAATCAAAGGGTTCCCTGTCACTAAGTGTTGGAGAAAATCCATATCTATGTGAATCTCCTCCATGCGACAAGAAGAAAAAGAGCAATATTATTATTCCCGTAGTTGTATCAGTTGCTGGAGTTCTGCTCCTTATGGTGGTCGCGGCAATTATATTTTTTACCCTTAAAAGGAGAAAGCCAAGAGGAACAAGTCCAATTGAGACCTCACAGCAAGTTGAAAAAGTTGAAGAACAAAATGATACCACTCTGCAAGTCACAAATAGACAATATTCATATCATGATGTCCTCAAAATGACCAACAACTTCAGCACAATTCTCGGAAAAGGTGGGTTTGGAACAGTTTATTTGGGCTACATTGCTGAAACTCCTGTTGCAGTTAAAATGCTCTCTCTATGTTCAGTTCAAGGTTATCAGCAATTCCAAGCAGAGGTTAAACTTTTAATGAGAGTTCATCATAGAAATCTGACTTCCCTTGTTGGGTATTGCAACGAAGAAACCAACAAGGGGCTCATATATGAGTACATGGCTAATGGTAACCTACAAGAGTACCTTTCAGGAAAAGACAACAAATCAAAGTTCCTGACTTGGCAAGACAGACTCCGTATGGCACTGGATGCAGCATTAGGATTGGAGTATTTGCATAATGGATGTAAGCCACCTATAATTCATCGAGATGTAAAATCGTCAAACATCTTGCTGAATGAAAACTCCAGAGCAAAAATAGCAGACTTTGGTCTATCTAAAATTATTCCAACTGATGGTGGAACTCATGTGTCAACTGTTGTTGCTGGTACTCCTGGTTATCTAGACCCTGAGTACTATATAACAAACAGATTGACAGAGAAAAGTGATGTTTATAGTTTTGGAGTAGTTCTTTTTGAGATAATCACAAGTCTACCAGTAATATCTGGAAACCATGAGAGAACTCACATAAGTCAATGGGTTAGCTCCATGGTTGCTAAAGGGGACATAAGGGCCATTGTTGACTCAAAGTTAAGTGGGGAGTTTGATACTAACTCTGCTTGGAGAGCTGTGGAAATGGCAATGACTTGTGTGTCTAGAAACCCCAACAACAGGCCAACCATGAATGAGGTAGTGAATGAACTAAAGGAGTGTTTGGCTACAGAAGGAGGTAGAACCAAACACAATGATGTTAGTACAGGAGATTCAGTTGAATTAGTTTCCCTGAATATGACAAGTACAGAATTCTCTCCCTTGGCTAGGTAG 2661 0.3965 MEMSKCFFSSLVGCLLFAVLVQSQDQSGFISIDCGIPAKFTYKEKTTGINYISDEKFINSGVSNSITSELQSMYQRQLWNLRSFPQGTRNCYRINITSGSKYLIRANFLYGNYDGQNELPSFDLHLGPNVWETVEITNASLLLSPEIIHVPSLDYIQICLVDTGSGTPFISAIELRNLMNDTYVTQSGSLSLYSRLDLGSTSKRKYRYSYDIYGRFWSYKAYIPDWTQISASISADSLVQNHYNPPAIVMSNAATPVNESAPMLVWWEPKNATDQFYVYMHFAELQVLEKNQTRSFTVTLNGDLFYADLVPQYQVTTTLFSKYATTGEKIQFLLKKTKHSTLPPILNAIEIYTVKEFLQSETEQEDVDAITTIKSSYGLTRNWQGDPCSPVDYIWEGLNCTYNGQNSPRITALNLSSSGLTGQIDPSISNFTMLEKLDLSNNSLSGPVPDFLSRLQNLKILNIQNNNFTGTVPTELVEKSKGSLSLSVGENPYLCESPPCDKKKKSNIIIPVVVSVAGVLLLMVVAAIIFFTLKRRKPRGTSPIETSQQVEKVEEQNDTTLQVTNRQYSYHDVLKMTNNFSTILGKGGFGTVYLGYIAETPVAVKMLSLCSVQGYQQFQAEVKLLMRVHHRNLTSLVGYCNEETNKGLIYEYMANGNLQEYLSGKDNKSKFLTWQDRLRMALDAALGLEYLHNGCKPPIIHRDVKSSNILLNENSRAKIADFGLSKIIPTDGGTHVSTVVAGTPGYLDPEYYITNRLTEKSDVYSFGVVLFEIITSLPVISGNHERTHISQWVSSMVAKGDIRAIVDSKLSGEFDTNSAWRAVEMAMTCVSRNPNNRPTMNEVVNELKECLATEGGRTKHNDVSTGDSVELVSLNMTSTEFSPLAR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5620g00002 886 SMART serkin_6 578 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5620g00002 886 Gene3D Transferase(Phosphotransferase) domain 1 653 870 - -
Pral5620g00002 886 SUPERFAMILY L domain-like 376 476 - -
Pral5620g00002 886 Gene3D Phosphorylase Kinase; domain 1 560 652 - -
Pral5620g00002 886 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 653 860 - -
Pral5620g00002 886 Pfam Protein tyrosine and serine/threonine kinase 581 847 IPR001245 GO:0004672|GO:0006468
Pral5620g00002 886 PANTHER OS07G0107800 PROTEIN-RELATED 30 851 - -
Pral5620g00002 886 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515
Pral5620g00002 886 CDD TM_EGFR-like 512 537 - -
Pral5620g00002 886 Gene3D Ribonuclease Inhibitor 367 487 IPR032675 -
Pral5620g00002 886 SUPERFAMILY Protein kinase-like (PK-like) 557 847 IPR011009 -
Pral5620g00002 886 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524
Pral5620g00002 886 Pfam Malectin-like domain 32 354 IPR024788 -
Pral5620g00002 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Pral5620g00002 886 FunFam Leucine-rich repeat receptor-like protein kinase 551 652 - -
Pral5620g00002 886 CDD STKc_IRAK 584 849 - -
Pral5620g00002 886 FunFam Leucine-rich repeat receptor-like kinase 365 497 - -
Pral5620g00002 886 ProSiteProfiles Protein kinase domain profile. 578 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5620g00002 Pral-Chr5620 21212 25395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5620g00002 1 886 Receptor kinase-like Gene Family AT1G51800 49.011 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pral5620g00002 Malectin_like 1.9e-115 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5620g00002 - - qsa:O6P43_027684 1141.33