LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5620g00001	ATGGGATTGTCAAAGAGCTTCATCTCTTTCCTCCTGCTGGTTTTTGCAGTTCTGGTTCAATCTCAGGCTCAATCAGGATTCATAAGCATAGATTGTGGGGCACCTGCAAAGTCCACCTACTTTGAGGAGACAACAGGCATATATTATATATCAGATGAGAAGTTCATAGAATCTGGAGTGAGTAACGCCATAACCACTGAGCTCCAAAGTAGGCTTCAACGGCAAGCTTGGAACCTAAGGAGCTTTCCTCAGGGAACAAGAAACTGTTACAGAATAAGCATCACAAGTGGCTCTAAATATCTGATCAGGGTCTCTTTTCTGTATGGAAATTATGATGGCCAGAATGTGTTGCCAACTTTTGATCTTCATCTTGGGCCTAACTTGTGGGAAACAGTAAAAATAACCAATGCATCTGTGCCATTACTGCCTGAGATCATACATGTTGCATCACAAGATTACATTCAAATCTGTCTGGTTGACACAGGCTCTGGAACGCCATTCATCTCTGCTATAGAATTAAGGGCCTTGGTTATGAGGAATGGTGTATATAATACTCAGCTTGGATCCTTGTCACTTCATTTCAGGTCGGATTTAGGCAGCAACAACTCATACAGGTATAGATATGATGCTTATGATCGCATTTGGATCTATGACTACCACCAAGACTGGACGCAAATAAATGCTTCAATTTCTGAAGAATCCTTAACTCAAAATGTTTTCAAACCACCAGCCATTGTTATGAGAAATGCTGCCACACCAATAAATGAAAGTGCTCCAATGAAAATAGAATGGGAGCCAGAAGATGCAACAGACCAATTCTTTTTTTACATGCATTTTTCAGAGCTTCAAGTATTAGAAAAGAATCAGACAAGATCAATCACTGTTACCATCAATGGCGAACCCTATTTTATCGTCGAACCTAAGTACCGAGTCACAAACACTAGGACAAACCGCGAATCTATCAGTGGGGAAAAAATTCAGATTTGGCTTCAGAAGACCGAGAATTCAAACCTCCCTCCCATTCTCAACGCTATTGAAATTTATAGAGTTAGAGAATTTTCCCAGTCAGAAACAGATCAAAGAGATGTTGATGCGATCGCAACAATCAAGTCTTCTTATGGGGTGACAAGAAACTGGCAAGGAGATCCATGTAGTCCAGTGGCCTATATATGGGAAGGTCTAAATTGTACTTCTAATCGTCAGAATTCCTTTAGAATCACAGCACTGAATTTGTCTTCAAGTGGATTGACAGGACAGATAGATCCTTCCATCGCAAATCTCACCATGCTGGAGAAGTTGGATTTATCAAACAATAGCTTAAGTGGAGTAGTGCCTAATTTTCTGTCTCAACTGCAGAACCTGAAGAGCTTAAACTTGAAGAGCAACAATTTCACAGGTACAGTTCCCTCTGATCTGCTTGAAAAATCAAAGGATGGTACGCTATTACTAAGTGTTGGACAAAATCCAAATCTATGTGAATCTCCTTCGTGCAACAAAAAAGAGAACAATGTTGCCATTCCCATAGTGGCATCAGTTGCTGGGGTTCTGATCCTTCTGATAGTTGCGACAATCACATTTGTTATTCTTAAAAGGAGAAAACCTAGAGGTGAGGCCGCTATATGCCCACTTGAGACCTCAGAGCGAGTTGACAATGTTGATGAACAAAAGGACACACCTCTGCAAATCATCAATAGGCAATATTCATATTCTGATGTCCTCAAAATGAGCAATAACTTTAGCACAGTTCTTGGAAAAGGTGGGTTTGGAACAGTTTATTTGGGTTACATTGATGAAACTCCAGTGGCAGTTAAAATGCTCTCCTCATCATCGGTACAAGGTTATCAGCAATTCCAAGCCGAGGTTAAACTCTTATTGAGAGTTCATCACAGAAATCTGACTTCCCTTATTGGGTATTGCAATGAGGAAACTAGTAAGGGGCTCATATATGAGTACATGGCTAATGGTAACTTACAAGAGTACCTTTCAGGAAGAAGCAACGATTCAAAGTTCTTGACTTGGGAAGACAGACTTTATATAGCACTAGATGCAGCACTAGGGTTGGAGTATCTGCATTATGGATGTAAGCCACCTATAATCCACAGAGACGTAAAATCTTCAAACATCTTGCTGAATGAAAAATTTAAAGCAAAAATAGCCGACTTTGGTCTATCTAAAATCATCCCAACTGATGATGGAACTCATGTGTCAACTGTTGTTGCGGGTACTCTTGGTTATCTAGACCCCGAGTACTTTATAACAAACAAATTGATAGACAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTTTCGAGATAATCACAAGTCTACCAACCATATCAGGAAACCATGAGAAAACTCACATAAGTGATTGGGTTAGCTCCATGGTTGCTAAAGGGGATATAAATGCCATTGTTGACTCAAGGTTAAGTGGAGAATTTGATAGCAACTCTGCTTGGAGAGCTGTGGAAATTGCAATGACTTGTGTGTCTGCAAACCCAAACAACAGGCCAACCATGAGTGGGGTAGTGAAAGAGCTAAAAGGGTGTTTGGCAACAGAATTAGCCAGAATCCAACGTAATGGTGCTAATGCAAGGGAGCCAGCTGAATTAGTGTCCATGACTATGATGAGTTCTACAGAATTCTCTCTCTCAGGTCGGTAG	2661	0.4047	MGLSKSFISFLLLVFAVLVQSQAQSGFISIDCGAPAKSTYFEETTGIYYISDEKFIESGVSNAITTELQSRLQRQAWNLRSFPQGTRNCYRISITSGSKYLIRVSFLYGNYDGQNVLPTFDLHLGPNLWETVKITNASVPLLPEIIHVASQDYIQICLVDTGSGTPFISAIELRALVMRNGVYNTQLGSLSLHFRSDLGSNNSYRYRYDAYDRIWIYDYHQDWTQINASISEESLTQNVFKPPAIVMRNAATPINESAPMKIEWEPEDATDQFFFYMHFSELQVLEKNQTRSITVTINGEPYFIVEPKYRVTNTRTNRESISGEKIQIWLQKTENSNLPPILNAIEIYRVREFSQSETDQRDVDAIATIKSSYGVTRNWQGDPCSPVAYIWEGLNCTSNRQNSFRITALNLSSSGLTGQIDPSIANLTMLEKLDLSNNSLSGVVPNFLSQLQNLKSLNLKSNNFTGTVPSDLLEKSKDGTLLLSVGQNPNLCESPSCNKKENNVAIPIVASVAGVLILLIVATITFVILKRRKPRGEAAICPLETSERVDNVDEQKDTPLQIINRQYSYSDVLKMSNNFSTVLGKGGFGTVYLGYIDETPVAVKMLSSSSVQGYQQFQAEVKLLLRVHHRNLTSLIGYCNEETSKGLIYEYMANGNLQEYLSGRSNDSKFLTWEDRLYIALDAALGLEYLHYGCKPPIIHRDVKSSNILLNEKFKAKIADFGLSKIIPTDDGTHVSTVVAGTLGYLDPEYFITNKLIDKSDVYSFGVVLFEIITSLPTISGNHEKTHISDWVSSMVAKGDINAIVDSRLSGEFDSNSAWRAVEIAMTCVSANPNNRPTMSGVVKELKGCLATELARIQRNGANAREPAELVSMTMMSSTEFSLSGR	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5620g00001	886	Pfam	Leucine rich repeat	406	464	IPR001611	GO:0005515
	Pral5620g00001	886	SMART	serkin_6	577	850	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5620g00001	886	FunFam	Leucine-rich repeat receptor-like kinase	361	494	-	-
	Pral5620g00001	886	Gene3D	Transferase(Phosphotransferase) domain 1	652	867	-	-
	Pral5620g00001	886	Gene3D	Phosphorylase Kinase; domain 1	560	651	-	-
	Pral5620g00001	886	FunFam	Leucine-rich repeat receptor-like protein kinase	550	651	-	-
	Pral5620g00001	886	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	698	710	IPR008271	GO:0004672\|GO:0006468
	Pral5620g00001	886	ProSitePatterns	Protein kinases ATP-binding region signature.	583	604	IPR017441	GO:0005524
	Pral5620g00001	886	PANTHER	OS07G0107800 PROTEIN-RELATED	28	850	-	-
	Pral5620g00001	886	SUPERFAMILY	L domain-like	372	472	-	-
	Pral5620g00001	886	SMART	LRR_typ_2	451	475	IPR003591	-
	Pral5620g00001	886	SMART	LRR_typ_2	427	450	IPR003591	-
	Pral5620g00001	886	Gene3D	Ribonuclease Inhibitor	363	481	IPR032675	-
	Pral5620g00001	886	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	652	858	-	-
	Pral5620g00001	886	Pfam	Malectin-like domain	30	350	IPR024788	-
	Pral5620g00001	886	ProSiteProfiles	Protein kinase domain profile.	577	850	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5620g00001	886	CDD	STKc_IRAK	583	848	-	-
	Pral5620g00001	886	Pfam	Protein tyrosine and serine/threonine kinase	579	846	IPR001245	GO:0004672\|GO:0006468
	Pral5620g00001	886	SUPERFAMILY	Protein kinase-like (PK-like)	557	846	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5620g00001	Pral-Chr5620	2556	7403	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5620g00001	3	881	Receptor kinase-like Gene Family	AT2G19210	48.210	0.0	820

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pral5620g00001		Malectin_like	4.5e-105	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5620g00001	-		-	gmx:100785345	1077.39