Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral561g00009 ATGGAGGAGACGAGGAAGTTCGTGTGCAAGTTCTGCAACAAGAGATTCCCCAGTGGGAAGTCTCTGGGTGGTCACATTAGAACCCATATGAATCAACATTCAAGCAATAAGGCCATTGCTGATTCTAGAAAGCTCGAAAGCAATGATGTTGATGATGCTGAGAGAAAGAAGAGGAGGAAGAGAGATTTAAGCTCATCAGATTATGGCCTCAGAGAGAATCCCAGAAAAACGAAGAGGTTTGTTCATAATCATCCCTTCTTCACTTTACATCATAAGGAGAAGTTCTGCAGAGAATGTGGGAAAGGATTTTCTTCTTTGAAAGCTCTATGTGGTCACATGGCGTGTCACACTGAAAAAGTAGAGAAGCAGAAATTTGCAACGATGGATGAAGCTCAATCTGATGCTGAAACTTCTGATCCAGATGATTTGAAGAGAACAAGGTTCATGACCCTTAACAATAATAACCCAACTTCTTCTGCGTCGGGGGTTGAACAAGAAGAAGAAGGAGTAGAAGAGGTGGCTACTTGCTTGATATTGTTGTCCAAGGGTTTTTATAGCCACAAAGGTCGTTTTGATTTGGACAAAGAGTCTAATTCTGATAACTATTCTGCAATTTTAGCGGGCAAAGCCAAATCACACTCTGTTGATGCCAGAATTGGTGTAGATGATGCTCAGAATAAGGTTAAGAACTCTGTTTATAATGCTTCTGAGATTGTGAAGGTGGGAAAGGACAAGATGAAGCTGAAGTTTTCAGATTCTGGGTATTCCAGATATGGTTCAAAAAAGGAAGATTCAAATGTTTCGATTCATGGGGTTTTCAGGAATGATGTTTTTAATCGACCAAAAGTGGAAGATGGGTATGGATTTAAGGATTATGATGATGTCTTTGATGAACCGAGGAAGATGATGATCAACAACAGATGCTACAGGAGCAGAAACGATGAGTCCAAAAAACTAGTGTTGGGAAATTCAGACAAATTCGATTATTCATTTAACAGTGCCAAACAAGAGTATCCTGGTAACAATTTGGATGATCAAGTTTCCTACAAGAAGAAGAAGAAAACTAGTTTTCCTAATCATGAAGTCTACAACAAAGACTCATATGACTCAGAATCATCATATGCTAGTGCTGAGAAAAGCACAGACAGTACTGATTCTGATTCTTTTCCTTGTTCTTATCAGAAGCCTAAGAGCAGTAACAAGGCCAAGAAGAAAGTGATGAAGAAGTCAAAGAAAACAAAGGAGCATGAGTGCCCAATCTGCAACAGAACTTTTAGGTCAGGCCAGGCCTTGGGAGGTCACAAAAGGTCCCATTTCGTAGGTGGATTTGAAGAAAACAACAACAGTGGATTAATAGTCCGACAAGAATCTTTGTCTCCTTCTGGTTCTCCTTCTCCTTCTCCTGCTCCTGCTGTTGTTCCTTGCCTGATTGATCTTAATCTACCTGCTCCTCCTGACGAATAG 1464 0.4037 MEETRKFVCKFCNKRFPSGKSLGGHIRTHMNQHSSNKAIADSRKLESNDVDDAERKKRRKRDLSSSDYGLRENPRKTKRFVHNHPFFTLHHKEKFCRECGKGFSSLKALCGHMACHTEKVEKQKFATMDEAQSDAETSDPDDLKRTRFMTLNNNNPTSSASGVEQEEEGVEEVATCLILLSKGFYSHKGRFDLDKESNSDNYSAILAGKAKSHSVDARIGVDDAQNKVKNSVYNASEIVKVGKDKMKLKFSDSGYSRYGSKKEDSNVSIHGVFRNDVFNRPKVEDGYGFKDYDDVFDEPRKMMINNRCYRSRNDESKKLVLGNSDKFDYSFNSAKQEYPGNNLDDQVSYKKKKKTSFPNHEVYNKDSYDSESSYASAEKSTDSTDSDSFPCSYQKPKSSNKAKKKVMKKSKKTKEHECPICNRTFRSGQALGGHKRSHFVGGFEENNNSGLIVRQESLSPSGSPSPSPAPAVVPCLIDLNLPAPPDE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral561g00009 487 MobiDBLite consensus disorder prediction 451 472 - -
Pral561g00009 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pral561g00009 487 MobiDBLite consensus disorder prediction 352 413 - -
Pral561g00009 487 MobiDBLite consensus disorder prediction 368 397 - -
Pral561g00009 487 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 486 - -
Pral561g00009 487 MobiDBLite consensus disorder prediction 22 75 - -
Pral561g00009 487 Pfam C2H2-type zinc finger 416 438 - -
Pral561g00009 487 Pfam C2H2-type zinc finger 96 117 - -
Pral561g00009 487 Pfam C2H2-type zinc finger 7 30 - -
Pral561g00009 487 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pral561g00009 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 416 438 IPR013087 -
Pral561g00009 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Pral561g00009 487 ProSitePatterns Zinc finger C2H2 type domain signature. 418 438 IPR013087 -
Pral561g00009 487 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Pral561g00009 487 Gene3D Classic Zinc Finger 76 153 - -
Pral561g00009 487 Gene3D Classic Zinc Finger 1 67 - -
Pral561g00009 487 SMART c2h2final6 7 29 IPR013087 -
Pral561g00009 487 SMART c2h2final6 416 438 IPR013087 -
Pral561g00009 487 SMART c2h2final6 94 116 IPR013087 -
Pral561g00009 487 SUPERFAMILY beta-beta-alpha zinc fingers 4 33 IPR036236 -
Pral561g00009 487 MobiDBLite consensus disorder prediction 39 75 - -
Pral561g00009 487 SUPERFAMILY beta-beta-alpha zinc fingers 413 439 IPR036236 -
Pral561g00009 487 MobiDBLite consensus disorder prediction 352 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral561g00009 Pral-Chr561 33745 35208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral561g00009 5 487 C2H2 Transcription Factor Family AT1G26610 36.667 6.67e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral561g00009 zf-C2H2_6 3.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral561g00009 - - pcin:129284607 595.504