Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5618g00031 ATGGATGTGAGGCCAAGAAATGAGGAGGTTTCTCCTCAGCTGCTAGATTTGATCCCAAAGGATCAAAAAGAATGGCATGTGAACGACACAGACGAAGGAGGAAGAACCCAAAACAACAGCAGCAACAACAACAAGAACAAAGACAAGTCTTGTTGTGAGGAGAGAAAACTTGAGCTCAGACTTGGCCCACCTGGTGAAGATTGGTCTCTCAATCATGATACCACCAAAAACAGTGATGAGTCTCTACTCTCTCTTGGCTACTTCTCTCAGCAAACTCAGAAAATCTCTGACTCTCCATGGGCTTCTTCGAAGGCTTCATCATTTCTTCAGTTCCCATCATGCAGCCCTCAGAGTATGCCAGAGAAGAAAGCTTTCTCATCATCCTCTTCTGCCAATCCAGCTGCGCCCTCTAATATCTCTCAGAAAAGAACTGCTCCTGGGCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAACAGCACTTCTAAGACAGCTCATGAGACACAGCAGCAGCATGATGTTGCAGACAAGGTTGCTGGGAAGAAACCTGTTGTTGACAACGTTGGTAAAGGTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATCGGGAGAAAAGTGGACCTTAGTGCTTATGACAGCTATGAAAAACTCTCCTCTGCAGTTGATGAACTCTTCAGATGCCTCCTAGCTGCTCAAAGAGATTCCTCTGTTGGAGGAATCCAGAACAAGGAAGAGGAAGAAAAAGCTATCACAGGTTTATTGGACGGGAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTCGCTGGGGACGTGCCATGGCACATGTTCGTATCAACTGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTAACAAGCAAGACAAGAAAACCACTTGA 957 0.4577 MDVRPRNEEVSPQLLDLIPKDQKEWHVNDTDEGGRTQNNSSNNNKNKDKSCCEERKLELRLGPPGEDWSLNHDTTKNSDESLLSLGYFSQQTQKISDSPWASSKASSFLQFPSCSPQSMPEKKAFSSSSSANPAAPSNISQKRTAPGPVVGWPPIRSFRKNLASNSTSKTAHETQQQHDVADKVAGKKPVVDNVGKGLFVKINMDGVPIGRKVDLSAYDSYEKLSSAVDELFRCLLAAQRDSSVGGIQNKEEEEKAITGLLDGSGEYTLVYEDNEGDRMLAGDVPWHMFVSTVKRLRVLKSSELSAFTLGNKQDKKTT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5618g00031 318 MobiDBLite consensus disorder prediction 47 62 - -
Pral5618g00031 318 Gene3D - 192 312 - -
Pral5618g00031 318 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 304 IPR003311 GO:0005634|GO:0006355
Pral5618g00031 318 MobiDBLite consensus disorder prediction 119 144 - -
Pral5618g00031 318 FunFam Auxin-responsive protein 192 313 - -
Pral5618g00031 318 SUPERFAMILY CAD & PB1 domains 193 298 - -
Pral5618g00031 318 MobiDBLite consensus disorder prediction 1 76 - -
Pral5618g00031 318 MobiDBLite consensus disorder prediction 119 182 - -
Pral5618g00031 318 Pfam AUX/IAA family 57 306 IPR033389 -
Pral5618g00031 318 MobiDBLite consensus disorder prediction 32 46 - -
Pral5618g00031 318 MobiDBLite consensus disorder prediction 159 174 - -
Pral5618g00031 318 ProSiteProfiles PB1 domain profile. 197 301 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5618g00031 Pral-Chr5618 232450 236582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5618g00031 201 312 B3 DNA Binding Superfamily AT4G23980 33.036 1.61e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral5618g00031 AUX_IAA 6.8e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5618g00031 K14484 - qsa:O6P43_018220 351.673