Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5618g00007 ATGGAAGTGCCTGAATACTTTGTCGGTGCCTACTTCGCCTCCGGAGGGGACCATTTCTCTCCGGAAAAGCGCCATTCTGACCAGAAGCCTGCCGAGCCTTTTGCCGTCGACGACCTCCTTGACTTCTCCCATGCCGACGCTATCATGTCCGATGCTTTCCTTGATAATGTCGCCGGCAACTCTACCGACTCATCTACCGGCACTGCTATTGACAGCTGCAACTCCTCAGTTTCTCGTGTCGACAACCGTTTCTCCGCCAACTTTGGCCCTCGTCCCTTCGGCGATCATCAGCTGTCTGGCGAACTCTGTGTGCCGTATGATGACATGGCGGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCGTTCACCGCACAAGACGAGCTGAAAACACTCCACCTTTTATCCGGCACCACCACCGCTTCCGCATTTGGCGCCAAACCTCAGACTCCAGAATCTTCCTCCTCTTCCGAAACCCTCCCGCCTTTCGCTCCCGATGCAGCTCGGAACGCACCGTTTTTCCGTCCGGAAACTCCATTGCCAGGCAAAGCACGGAGCAAGCGCTCACGCGCCGCTCCTGGAGATTGGTCCACGCGCTTCCTCCATCTCGTAACGCCAGGACCGCACGACCAGACAACCACAACGGAAGCCAAACCGGTGCAAGCTAAGGCGACGGCAGTTAAGAAGAGGGAGAGCTCAAATTCCGATTCCTCAGGGAGGAAATGCCTGCACTGTGCCGCCGAGAAGACTCCGCAATGGCGGACAGGCCCGATGGGTCCGAAGACGCTGTGCAATGCTTGTGGAGTCCGGTACAAGTCCGGCAGGCTGGTGGCCGAGTATCGACCGGCGGCTAGCCCGACGTTCGTGTCGACGAGGCACTCGAATTCTCATCGGAAGGTCTTGGAGCTGAGGAGGCAGAAGGAGCTGCAAAGGCAGCAGCACCAACAACTGATGAGCCAAGCATCCATTTTCGGCGTATCCAACGGCGGAGACGAGTTCTTGATCCAGCATCACGGTGGGCCCGACTATAGGCATATCATCTAG 1044 0.5718 MEVPEYFVGAYFASGGDHFSPEKRHSDQKPAEPFAVDDLLDFSHADAIMSDAFLDNVAGNSTDSSTGTAIDSCNSSVSRVDNRFSANFGPRPFGDHQLSGELCVPYDDMAELEWLSNFVEDSFTAQDELKTLHLLSGTTTASAFGAKPQTPESSSSSETLPPFAPDAARNAPFFRPETPLPGKARSKRSRAAPGDWSTRFLHLVTPGPHDQTTTTEAKPVQAKATAVKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVAEYRPAASPTFVSTRHSNSHRKVLELRRQKELQRQQHQQLMSQASIFGVSNGGDEFLIQHHGGPDYRHII 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5618g00007 347 FunFam GATA transcription factor 231 317 - -
Pral5618g00007 347 SMART GATA_3 236 286 IPR000679 GO:0006355|GO:0043565
Pral5618g00007 347 MobiDBLite consensus disorder prediction 142 161 - -
Pral5618g00007 347 PIRSF Txn_fac_GATA_plant 18 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral5618g00007 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 298 - -
Pral5618g00007 347 MobiDBLite consensus disorder prediction 208 240 - -
Pral5618g00007 347 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Pral5618g00007 347 Pfam GATA zinc finger 242 275 IPR000679 GO:0006355|GO:0043565
Pral5618g00007 347 Coils Coil 300 320 - -
Pral5618g00007 347 MobiDBLite consensus disorder prediction 142 194 - -
Pral5618g00007 347 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Pral5618g00007 347 PANTHER GATA TRANSCRIPTION FACTOR 23 315 - -
Pral5618g00007 347 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
Pral5618g00007 347 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Pral5618g00007 347 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5618g00007 Pral-Chr5618 43381 44914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5618g00007 32 347 C2C2-Gata Transcription Factor Family AT4G32890 45.231 1.32e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5618g00007 GATA 2.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5618g00007 - - gmx:100776605 489.189