Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5615g00009 ATGGCTCGCCTACTGCTAAGCATGGATTCAACCTCATCCCCTCCAGGTAACGGCAACAGAACAGGGGGTTTTAACACAAGTGATGCCAATTTTGACACAAACATGGTGATTATACTAGCGGCCTTGCTCTGTGCATTAATATGTGCTTTAGGGCTAAACTCAATTGTAAGATGTGCTTTGAGATGCAGCAGCAGGTTTGCTTTTGAGACATCAGATGAAGCTGCAGCTCGTGTAGCGGCAAAAGGGTTGAAGAAGAGTGTTTTGCGTCAGATCCCTATAGTTGTATACGGTTCATCAGGTTCTACTGATATTGGAGCCACTGAGTGTCCAATTTGCCTAGGAGAGTTTGTGGATGGAGAGAAAGTGAGGGTTCTTCCAAAGTGCAACCATGGATTCCACGTGAGGTGCATAGACACATGGCTTCTCTCACATTCTTCTTGCCCTACTTGCAGGCAGTCTTTGCTTGACCAGCATAATGCAAGCACTTCTGGTTCTGGCAATGTATAG 507 0.4596 MARLLLSMDSTSSPPGNGNRTGGFNTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSSRFAFETSDEAAARVAAKGLKKSVLRQIPIVVYGSSGSTDIGATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLDQHNASTSGSGNV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5615g00009 168 CDD RING-H2_EL5-like 108 151 - -
Pral5615g00009 168 SMART ring_2 109 150 IPR001841 -
Pral5615g00009 168 FunFam RING-H2 finger protein ATL72-like 74 155 - -
Pral5615g00009 168 Pfam Ring finger domain 108 151 IPR001841 -
Pral5615g00009 168 PANTHER RING-H2 FINGER PROTEIN ATL78 24 165 IPR044602 GO:0016567|GO:0016740
Pral5615g00009 168 SMART FANCL_C_2 105 155 - -
Pral5615g00009 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 156 IPR013083 -
Pral5615g00009 168 SUPERFAMILY RING/U-box 108 157 - -
Pral5615g00009 168 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Pral5615g00009 168 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5615g00009 Pral-Chr5615 52547 53771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5615g00009 1 158 C3H Transcription Factor Family AT3G10910 60.947 7.25e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5615g00009 - K19040 qsa:O6P43_020103 249.98