Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5613g00030 ATGTCCAGAGAAAGGGAAAATTTTGAAGAGATAGGGAAGAAGATCAAGAGGGAGGGAGATGTTTCATCGCAAATGGGAAGAAGACACATGTTGGGTCCTCCAGGAACCCTGAATACCATAACCCCTTGTGCAGCATGTAAGCTCTTGAGGCGAAGATGTGCTCAGGAATGTCCCTTTTCTCCTTACTTTTCCCCTCATGAGCCCCAAAAATTTGCTTCTGTTCACAAGGTTTTTGGTGCTAGCAACGTCTCCAAGATGCTCATGGAGGTACCAGAGAGTCAAAGAGCGGATGCAGCAAATAGTCTAGTGTATGAGGCAAATGTGAGGCTAAGAGACCCAGTTTACGGATGCATGGGTGCAATTTCTGCTTTGCAGCAGCAAGTTCAATCTTTGCAAGCTGAACTTAATGCAGTAAGAGCTGAAATACTTAAATACAAACTTAGGGAAGCTACTAACATCATACCCTCCTCTCATCATATTCCTGTCCTCCCTAATTCCTCTCGGGCCGTGTCAATCGCCGCTCCACCGCCACCGCCACCTCCGCCGCCGCCGCCTTCTCTTCCTTCTGCTTCTGATTCCTCTTCTTCCATGTATACCCAAGTCCACCAGAGGCCTCCCACCAATTATACCACAATTTCAAGTGACAATATTTCCTATTTTGGTTAA 666 0.467 MSRERENFEEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREATNIIPSSHHIPVLPNSSRAVSIAAPPPPPPPPPPPSLPSASDSSSSMYTQVHQRPPTNYTTISSDNISYFG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5613g00030 221 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Pral5613g00030 221 MobiDBLite consensus disorder prediction 168 221 - -
Pral5613g00030 221 MobiDBLite consensus disorder prediction 171 189 - -
Pral5613g00030 221 MobiDBLite consensus disorder prediction 190 221 - -
Pral5613g00030 221 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Pral5613g00030 221 MobiDBLite consensus disorder prediction 1 34 - -
Pral5613g00030 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 198 - -
Pral5613g00030 221 Coils Coil 121 148 - -
Pral5613g00030 221 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5613g00030 Pral-Chr5613 189598 191814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5613g00030 27 221 AS2 family AT2G40470 72.081 3.33e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5613g00030 LOB 5.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5613g00030 - - ccaj:109797870 335.88