Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5613g00023 | ATGGTTTCTAATAAGGAGCACAAGAGAGCCGCTCTGCATGAGAAGCTCCAACTCCTTCGTTCTATGACTAACTCTCGTGCTCTGGACAAAACGTCGATCATATTGGACGCAACAAAGTATATCGAAGAGCTAAAGCAAAAGGTAGAAAGACTGAATCAAGACATTGCCACTGCAGAAACTTCGAAAGACCAAAATCATTTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGATTCCTCATAAATGTATATTCAGCCAAGAGTTGCCCAGGTCTGCTAGTTCCCATATTGGAGGTCTTCGATGAGATGGGTCTCAGCGTCACGGAAGCTAGGGTTTCCTGTTCAGACACTTTCCGATTTCAGGCAGTTGGAGGAGAAGAAGAAGAAGAAGGTGACAGCATGGATGAAGAAACAGTGACGCGAGCAGTGGGAAGAGCCATAAAGAATTGGAGAGAGAGTACGAGCCAGCAATGA | 474 | 0.4515 | MVSNKEHKRAALHEKLQLLRSMTNSRALDKTSIILDATKYIEELKQKVERLNQDIATAETSKDQNHLPMVTVETLEKGFLINVYSAKSCPGLLVPILEVFDEMGLSVTEARVSCSDTFRFQAVGGEEEEEGDSMDEETVTRAVGRAIKNWRESTSQQ | 157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5613g00023 | 157 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 1 | 153 | - | - | |
| Pral5613g00023 | 157 | Coils | Coil | 34 | 61 | - | - | |
| Pral5613g00023 | 157 | Gene3D | - | 6 | 67 | IPR036638 | GO:0046983 | |
| Pral5613g00023 | 157 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 8 | 58 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5613g00023 | Pral-Chr5613 | 143194 | 144998 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5613g00023 | 12 | 145 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G10570 | 27.397 | 1.03e-08 | 51.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5613g00023 | - | - | tcc:18600910 | 217.624 |