Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5613g00002 ATGTCGCACAAAAAGAGGAATTTACATCAATCAAAGCATCCATTGAAATCTCACCCCTTTGAGGCATTTCTCTCTGATTCATGGAAAGCTGTGGAACTCATAAAAATTGAGGGGGGAACTTCAACCCTACATTTTATCAATAACCAAAACAGAGTTTTGAAGAAAGGTCCTGATTCAGACATTCGGATAAGGTCAAGAAAAGCTACTCTATCAGATTGCTCCTGTTTTCTAAGACCTGGAATTGATGTATGTGTGTTATCATGCTCTCAACAAGATAATAGTTCAGGGAAAATTTGTCTTGAACCTGGGTGGGTTGATGCTAGAATAAGATCTGTACAGAGAAAGCCCCACGTATCTGAGTGTTCATGTGAATATTTTGTCAACATCTATGTTAATCAAGGTTGTTATGATCCAGAGATGAGAATTCTTAATAAGGAGATTAAAGTGGTTGGAATAAATCAAATATCCATCCTTCAGAAGCTTGATAATCCCTGTGAAGATCAGCATTACCGCTGGGATTTATCTGAGGATTGCTTTGAAGCACGAAAGACTAAATTGTTTTTGGGAAAATTCTTATCTGATGTTTCATGGTTAGTTGTTGCATCAGTTTTAAAGCAGGTCTCATTCTGTATAAGATCTGTAGAAAGCAAGATTGTGTATCAAATTTTGGGACGTGAATGTTCTAGCTCTTCATTGAACTATAATTCTCTTAAACATGTAAATTTCAGAGTAGACAACGGGATGTCAGTACCCATTATTTCTCAAGTCTTTCCATCTGACAACAATAAGGTAGACCAAACAAAAGTTACATATGAAGATGAGATCTCACCAATTTCTCACATTGAGGGCTTACGGCGTTCCAAACGTCGTAACATAGAACCTGAACGCTATCTTGGTTATGATGATGTCTCTAAGTTGGATTTTGGTCATGTTCGAACCAGTTTACCCAAGTCCAACACGAGAAACAACGGTGACAAAGATGATGTTGATTTACTGGCAAATTGTCTAGAAAAGGACATAGATGCTTGTCAAAATATTAAGACAAATACCTGCCAGGAGGTCCTAGCGAACAACAGTAGGACTGCAAGTGGGAAGGTGGGGTTAGATAATGTTGATAAGAAAGGTCATGAGACTCAACTTGCTAGTGATTCTCTGCCTGGCGGAGGTGGTCCAGTGGCCCTTGACCATTCTTTTGTCAATACCATTAGTACTGGAAATTCTGGGCATGAAAATTGTGTCGTTTCTGAATATAATCACCAGATTCATAGCCCTAAACTGAACAGGAAAATTGTTGATCCATGGACATTTGATCCCTATGATCATCAATCAAAAGTTCCTGATCCCGAAAATTCTGCAATCAAGATTGATGATAAATCTTCTTCACGTTATTACTTTGGTACGTGTAATGTCCAGCGGAAGGATTTATCTGGCCTGGAGGACATGGATATTGAAAAGAGGTGGGAAGGGATACATTCCAATAAAGAAATTCAAGAAAAAAAATATCATTCACCAATGACAAGAAGTAAAAGTCGTGGGAAAGAAAGAACTTACAAAGACAAATCCTCTGGTGATGCTGAAAATTCTGCAAAAGAGATTGGTGATAAATCTTCTACAGGTTATTGTTTTGATAGGTGTAATGTCCAGAGGAGGGATTTATCTGGTCTGGAGGACAGGGATACTGAAAATAGATGGAATGGGATCCATTCCGATAAGGAAATTCAAGGGAAGAAATATAACTCGCCAATGACGAGAAGTAATAGTTGTGTGGAAGAAAGAACTTACAAAGGCAGATCCTTAAGTGACGCTGAAAATTCTGCAAAAGAGATTGGTGATAAATCTTCTAATATCCAGAGGAAGGATTTACCTGGTCTGGAGGACAAGGATGCTGAAAATAGAGAGGAAGAGATGCATTCCAATAAAGAAATTCAAGGGACAAAATATCATTCACCAATGACCAGAAGTAGAAGTCGTGGGGAAGAAAGAACTTACAAAGAAAGATCCTTAAGTGATGCTGGAAATTCTGCAAAAGAGGTTGGTTGTGGTGATAAATCCTCTAGATGTTATTATTTTGGTACCTGTAATGTGCAAAGGAAAGATTTACCTGGTCTTAAGGAGGTGGATTCTAGAAATAGATGGGAAGGGATATGTACCAATGAAGGAATTCAAGGGAAAAAATATTATTCACCAATGGCAAGAAGTAAAAGTTGTGGGGAAGAAAGAATTAAGGAAGACGGATCCTTGAGTGATGCTGGAAATTCTGCAAAATCTTCTAGAGGTTATTGTTTTGGTACCTGTAATGTGCAGAGGAAAGATTTATCTGGTCTGGAGGGCATGGATACTGAAAATAGATGGGAAGGGATATGTTCCAATAAAGAAATTCAAGGTAAAAAATCTCATTCACCAATGGCAAGAAGTAAAAGTCACGGGGAAGAAAGAACTTACAGAAACAGATCCTTGAGTGATGCTGCCTGCAAGGAATTGATAGATTTTTACTTAAAGAATACTGACACGGCGCCAAATAAGGGGGGGCCGCCTATAAATAACCAGTGGGTAGAATTTAAGGCAGCAAGCGACTTTGGGCAAAACAGGGGAGCAGAAGCTGATGGAGAAGTTTCTGAAATTGATATGTTATGGAAAGAAATGGAAGTTGCATTAGCATCAAATTATGTTTTTGATAACACTGAGGTTTCGAAGTCTGCCATCTTTTCTGAGACTGAGGAAAATTCCAACGAAGTTTGTCAACACAAGTTTAGATTGAATGAAGAAATTGGGATTTACTGCTGGGATTGTGGCTTTGTGAGCACAGAGATAAAAGACATCTCACCGCCATTTGTGCAGAATTTGGGATGGCAACAAGATGAAAAGCAGTGGAATGCTGAAAATTTGGAGGCGAGGGCCGATGAGAATGATAGTTTACATCTTTCCTCAGGTCACACTTCAATTGATCCGCCTGTATCTGAAGAAAATGATATCTGGCGACTGATCCCCGAACTTACTAGTAAGTTGCATGACCACCAGAAAAAGGCTTTTGAATTTCTTTGGAAAAATATTACTGGATTTGTGGAACCAGCCTCTGTGAAAGGTGCATCTAAAAGAATAGGTGGCTGTGTGATATCTCATTCACCTGGAGCTGGAAAAACTTTCCTAATTATTGCATTTCTTGCAAGCTACTTGAAGATGTTCCCAGGAAAGAGACCTTTGGTCCTTGCTCCAAAGACAACACTTTATACGTGGTACAAAGAATTTATCAAATGGGAAATTCCTATTCCAGTGTATCTGATTCAATCTCAACGTAGAGCCCAAGGAGTATCCAGGGAGAAGTCAGTGGTTATTCCTGGTGTTCCGAAGCCCACTGGTGATGTCAGTCATCTTTTGGACTCTCTGGAAAAAATAAAGAAGTGGCTTTCGCACCCTAGTGTTCTAGTCATGAGTTATACTTACTTTCTTAGGCTGATGGGAGAGAATTCAAAGTTTTCACACAGAAGGTATATGGCTGAAGTCTTGAGGAAAAGTCCAGGGGTTCTTATTCTGGATGAAGGGCACAATCCTAGAAGTACAGAATCATGTTTGAGGAAAGCCTTAATGAAAGTAGAGACAGAATTGAGAATTCTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGTTCATGAAGTGCTGAGAGAATTAGACCCCAAATACAGGAGACAAAAAGGTGGAGCTGAAAGAGAACTGAACTTTGTAGAAGCACGAGCCAGAAAATTCTTCTTAGATAAAATTGCAAAGAAAATAGACTCTGATAATAATGATGAGAGGCTGCAGGGTCTAAACATGCTAAGAAAGATCACAAATGGATTTATAGATGTTTATGAAGGTGGAAGTTCTGATAGTCTTCCTGGTTTGCATGTTTATACTTTGTTAATGAATATTACTGATTGTCAAGATCAGATTTTTCGGGTACTCCATGAGAAAAAAGCCGACTCAAATCGTTATCCTATGGAGGTGGAGCTTTTGGTAACCCTGGCAGCAATACATCCGTGGCTAATCAAAACGGTTGCATGCTCTGGTAAGTTTTTAGCTGAGGCTCAACTGAGGGAGCTGGAAAAATGCAAGTTTGATTTGAAGATAGGGCCAAAAGTACGGTTTGTTTTGAGCCTTGTATTTCGTGTCGTCAAGGAGGAAAAGACTCTTGTCTTCTCCCACTACACTGCACCTATGAGACTGTTTGTAGAACTATTCGAGAAATTCTTTGGGTGGCAGAAAGATCGTGAGGTTTTGGTACTTTGTGGGGAACAAGATCTCTTTGAACGGGGGAGAGTCATGGATAAGTTTGAGGAACCTGGAGGAGCATCAAAGGTACTCCTTGCGTCAATTACAGCCTGTTCTGAAGGCATTAGTCTGACAGCAGCTTCTCGTGTGATTTTGTTGGACTCGGAGTGGAATCCATCCAGAACAAGGCAAGCTATTGCCCGTGCCTTTCGTCCTGGTCAGCAAAGGATTGTTTATGTGTATCAGCTTTTGGTGACAGGCACAATGGAGGAACAAAAGTATAGCAGAACCACTTGGAAAGAGTGGGTTTCAAGGATGATTTTTAGTGAGGATTTTGTGGAGGATCAATCCCAAGGGCAAGCAGAAAACCTTGAAGATGATATCCTACAAGAAATGATTGCGGAAGACAAGTCTAAAATATTCCATGTGATAATGAAAGATGAGAAGGCTTCAACCAACTGA 4749 0.3957 MSHKKRNLHQSKHPLKSHPFEAFLSDSWKAVELIKIEGGTSTLHFINNQNRVLKKGPDSDIRIRSRKATLSDCSCFLRPGIDVCVLSCSQQDNSSGKICLEPGWVDARIRSVQRKPHVSECSCEYFVNIYVNQGCYDPEMRILNKEIKVVGINQISILQKLDNPCEDQHYRWDLSEDCFEARKTKLFLGKFLSDVSWLVVASVLKQVSFCIRSVESKIVYQILGRECSSSSLNYNSLKHVNFRVDNGMSVPIISQVFPSDNNKVDQTKVTYEDEISPISHIEGLRRSKRRNIEPERYLGYDDVSKLDFGHVRTSLPKSNTRNNGDKDDVDLLANCLEKDIDACQNIKTNTCQEVLANNSRTASGKVGLDNVDKKGHETQLASDSLPGGGGPVALDHSFVNTISTGNSGHENCVVSEYNHQIHSPKLNRKIVDPWTFDPYDHQSKVPDPENSAIKIDDKSSSRYYFGTCNVQRKDLSGLEDMDIEKRWEGIHSNKEIQEKKYHSPMTRSKSRGKERTYKDKSSGDAENSAKEIGDKSSTGYCFDRCNVQRRDLSGLEDRDTENRWNGIHSDKEIQGKKYNSPMTRSNSCVEERTYKGRSLSDAENSAKEIGDKSSNIQRKDLPGLEDKDAENREEEMHSNKEIQGTKYHSPMTRSRSRGEERTYKERSLSDAGNSAKEVGCGDKSSRCYYFGTCNVQRKDLPGLKEVDSRNRWEGICTNEGIQGKKYYSPMARSKSCGEERIKEDGSLSDAGNSAKSSRGYCFGTCNVQRKDLSGLEGMDTENRWEGICSNKEIQGKKSHSPMARSKSHGEERTYRNRSLSDAACKELIDFYLKNTDTAPNKGGPPINNQWVEFKAASDFGQNRGAEADGEVSEIDMLWKEMEVALASNYVFDNTEVSKSAIFSETEENSNEVCQHKFRLNEEIGIYCWDCGFVSTEIKDISPPFVQNLGWQQDEKQWNAENLEARADENDSLHLSSGHTSIDPPVSEENDIWRLIPELTSKLHDHQKKAFEFLWKNITGFVEPASVKGASKRIGGCVISHSPGAGKTFLIIAFLASYLKMFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIQSQRRAQGVSREKSVVIPGVPKPTGDVSHLLDSLEKIKKWLSHPSVLVMSYTYFLRLMGENSKFSHRRYMAEVLRKSPGVLILDEGHNPRSTESCLRKALMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLRELDPKYRRQKGGAERELNFVEARARKFFLDKIAKKIDSDNNDERLQGLNMLRKITNGFIDVYEGGSSDSLPGLHVYTLLMNITDCQDQIFRVLHEKKADSNRYPMEVELLVTLAAIHPWLIKTVACSGKFLAEAQLRELEKCKFDLKIGPKVRFVLSLVFRVVKEEKTLVFSHYTAPMRLFVELFEKFFGWQKDREVLVLCGEQDLFERGRVMDKFEEPGGASKVLLASITACSEGISLTAASRVILLDSEWNPSRTRQAIARAFRPGQQRIVYVYQLLVTGTMEEQKYSRTTWKEWVSRMIFSEDFVEDQSQGQAENLEDDILQEMIAEDKSKIFHVIMKDEKASTN 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5613g00002 1582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1027 1227 IPR014001 -
Pral5613g00002 1582 Pfam SNF2-related domain 1014 1233 IPR000330 GO:0005524|GO:0140658
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 737 756 - -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 494 531 - -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 559 577 - -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 590 642 - -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 652 671 - -
Pral5613g00002 1582 SMART ultradead3 998 1235 IPR014001 -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 797 815 - -
Pral5613g00002 1582 SMART helicmild6 1413 1502 IPR001650 -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 494 534 - -
Pral5613g00002 1582 Pfam Helicase conserved C-terminal domain 1387 1501 IPR001650 -
Pral5613g00002 1582 Gene3D - 976 1263 IPR038718 -
Pral5613g00002 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1230 IPR027417 -
Pral5613g00002 1582 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 54 1581 IPR044567 GO:0080188
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 559 679 - -
Pral5613g00002 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1302 1564 IPR027417 -
Pral5613g00002 1582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1389 1554 IPR001650 -
Pral5613g00002 1582 MobiDBLite consensus disorder prediction 793 815 - -
Pral5613g00002 1582 Gene3D - 1305 1582 IPR027417 -
Pral5613g00002 1582 CDD SF2_C_SNF 1377 1513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5613g00002 Pral-Chr5613 20212 26853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5613g00002 1400 1521 RAD5 or RAD16-like Gene Family AT5G43530 37.705 2.86e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5613g00002 SNF2_N 8e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5613g00002 K10875 - gmx:100811703 1110.52