Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5604g00007 ATGCTTCACGTCCACCAACAGAATCACCATCATCAGGTAGTGCAGGAAAATAATAACATGTCTAATTTGATGACTACTTCTGCATCTGCTGAAGGCAATGTTTCAACTGGTACCGCCAATTATCTTCCTCATCATCAACAATACTTGGCTCCTCCATCATCATCTTGTTCGTCTCAATCTCAGCCAGCACTGAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCAGAAGCTGAAGTGATCGCCTTGTCTCCAAAGACTCTGCTAGCAACGAACAGGTTCATGTGCGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAACTGAAGCAGAGAACGAGCAAAGAGATGAGGAAGAAGGTATACGTGTGTCCAGAACCAAGCTGTGTTCACCATAACCCTTCAAGAGCACTGGGAGACCTCACAGGGATTAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTTAAAGAGGTACGCTGTTCAATCCGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACGCACAGAGCATTCTGTGATGTATTAGCAGAAGAGAGTGCTTTAAGATCAGGAAACAACCAGCAAGTTCTTCTCCTTCCCTCTTCACAACCACACTTCAACAATAATATTTCTCAGGAAATATCTTCTTCTTCTAGCCTGTTCAGGCAGGTAATCCAGATTCCCTCTTGGCTTGGTGGTGGCCCACCCACTAGCTGTGCTATAGATCAGCACCGTCAACTTCATCATCTTGGCCATGAAAGTCCAAACCCTAACCCTACTGCTAGCCTAGGTCCCACCACCCCCACCACCGCTGGTCTTCTTCCCGCTTACCAACTTCCAGGTCCAGCGCCTTCTTCGCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTTCAACCATCAGCAGAACCGGTTCGCCCATGCTCAGGACCCACACCAACCCTAGTCACGTGTCTGCTACTACCACCACTCATCACTCTCCCGCTTTGAAACCTCAAGGTCACGTGACTACGACCAGCTCCGGCCATGGCTTCTTGTCTCCTTTCTCTTTCTCTTCTACTTCTGATCAGTTTGCAGGTGCGGCGGGTTCTTTCGAGGAGGCTTTGATTATTAATGGTGGGATATTGAATCCCAAGAAAGATGCGAACTTGCGCGACGGTGCTCCTTTCAAAACAACCGATGCCGGCGGCGGTCGGAGTGCTGGGAACGAGGGTTTGACGAGAGATTTTTTGGGTCTTAAACCTCTTTCCCATAATGATATTCTCAGCATGGCTGGTATTGGAAACTGCATGAACTCTTCTTCCTCTTCCCTCCAGGATCACCGAATTGGTCAGTTCCAATGGCAAGCTTAA 1479 0.4848 MLHVHQQNHHHQVVQENNNMSNLMTTSASAEGNVSTGTANYLPHHQQYLAPPSSSCSSQSQPALKKKRNLPGNPDPEAEVIALSPKTLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEMRKKVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCLKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAEESALRSGNNQQVLLLPSSQPHFNNNISQEISSSSSLFRQVIQIPSWLGGGPPTSCAIDQHRQLHHLGHESPNPNPTASLGPTTPTTAGLLPAYQLPGPAPSSHMSATALLQKAAQMGSTISRTGSPMLRTHTNPSHVSATTTTHHSPALKPQGHVTTTSSGHGFLSPFSFSSTSDQFAGAAGSFEEALIINGGILNPKKDANLRDGAPFKTTDAGGGRSAGNEGLTRDFLGLKPLSHNDILSMAGIGNCMNSSSSSLQDHRIGQFQWQA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5604g00007 492 MobiDBLite consensus disorder prediction 356 383 - -
Pral5604g00007 492 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
Pral5604g00007 492 MobiDBLite consensus disorder prediction 45 66 - -
Pral5604g00007 492 MobiDBLite consensus disorder prediction 292 312 - -
Pral5604g00007 492 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pral5604g00007 492 Pfam Zinc-finger double-stranded RNA-binding 94 116 IPR022755 -
Pral5604g00007 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 51 475 IPR031140 -
Pral5604g00007 492 Gene3D Classic Zinc Finger 127 218 - -
Pral5604g00007 492 MobiDBLite consensus disorder prediction 45 77 - -
Pral5604g00007 492 Gene3D Classic Zinc Finger 90 117 - -
Pral5604g00007 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Pral5604g00007 492 MobiDBLite consensus disorder prediction 288 312 - -
Pral5604g00007 492 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Pral5604g00007 492 SMART c2h2final6 135 165 IPR013087 -
Pral5604g00007 492 SMART c2h2final6 170 190 IPR013087 -
Pral5604g00007 492 SMART c2h2final6 94 116 IPR013087 -
Pral5604g00007 492 FunFam protein indeterminate-domain 12-like 73 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5604g00007 Pral-Chr5604 37366 40666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5604g00007 19 478 IDZ Gene Family AT1G55110 50.633 9.10e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5604g00007 zf-C2H2_jaz 6.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5604g00007 K25870 - qsa:O6P43_027636 463.766