Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5603g00007 ATGCGAACCATCATCTTCCAATCTGACATGCGAGCTAACGACCCCGTCGGAGGTTGCTACAGATACATTCAAGAGCTTCAAGCTCAGATCAAATACCACCAGGCCGAGCTTGAGCTTGTTCTTCAACAGCTCGCTCTTTATCGATCCCAACCTCACCTTCATCATCATGATCACTTAAATCTTTATAATAACAACCCTATTGCACCAGTAGTACCTCATCCCACTCATTATCAATACCTTCAACAAGAACCGCCGTACATGATGGTTCATCCGCAGGAACAACATCATCAGATTCAGAATAGTGATGTATGTTTGCAGGAGGATGTTAGTGGTTGTTGGGGAGTGCAGGATTCTGGGTGCCTGTCGTCTTTATCGTTACAGAACAAGAATATGTCGGGGACGATATGA 408 0.4485 MRTIIFQSDMRANDPVGGCYRYIQELQAQIKYHQAELELVLQQLALYRSQPHLHHHDHLNLYNNNPIAPVVPHPTHYQYLQQEPPYMMVHPQEQHHQIQNSDVCLQEDVSGCWGVQDSGCLSSLSLQNKNMSGTI 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5603g00007 135 Pfam Lateral organ boundaries (LOB) domain 1 40 IPR004883 -
Pral5603g00007 135 Coils Coil 23 43 - -
Pral5603g00007 135 ProSiteProfiles LOB domain profile. 1 44 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5603g00007 Pral-Chr5603 30771 31178 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5603g00007 1 56 AS2 family AT3G13850 64.286 6.11e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5603g00007 LOB 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5603g00007 - - pcin:129289336 118.627