Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral559g00002 ATGGAAGGCTTGTCGTCGCATCCCATACCTCGAACAGTAGAGGAGGTTTTTAGCGACTTTAAGGGCAGAAGAGCTGGAATGATTAAGGCCCTTACTACGGATGTCGAAAAGTTCTACCAGCAGTGCGACCCTGAGAAGGAGAACTTGTGTCTATATGGATTTCCTAATGAAACATGGCAAGTGAATTTGCCAGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCTTTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGTTATCACTTGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTTGCTTTCTATTTTGGTGCTCGATTTGGCTTTGGTAAGAATGAGAGGAAAAGGCTTTTTCAAATGATAAATGATCTCCCAACGATATTTGAAGTTGTGACAGGAAGTGCCAAGCAATCAAAGGATCATTCAGCTGCTCATAGCAATGGTAGCAAAAGCAAATCAAGTGGGAAGTCTCGCCAATCTGAGTCACAGGCCAAGGTAGTGAAGATGTCACCACCACCCAAAGAAGACGATGAGAGTGGAGAAGAAGATGAAGATGACGAACAAGGTGCAACGTGTGGGGCATGTGGCGATAACTATGCAAATGATGAATTCTGGATCTGTTGTGACGTGTGTGAGAGATGGTTCCATGGAAAATGTGTCAAGATTACTCCTGCTAAGGCTGAGCACATTAAGCAGTACAAGTGCCCAAGCTGTAGCAACAAAAGGGCTAGAGTCTAG 759 0.4519 MEGLSSHPIPRTVEEVFSDFKGRRAGMIKALTTDVEKFYQQCDPEKENLCLYGFPNETWQVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDHSAAHSNGSKSKSSGKSRQSESQAKVVKMSPPPKEDDESGEEDEDDEQGATCGACGDNYANDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral559g00002 252 MobiDBLite consensus disorder prediction 145 173 - -
Pral559g00002 252 PANTHER CPG BINDING PROTEIN 10 251 IPR045104 GO:0006355|GO:0042393
Pral559g00002 252 MobiDBLite consensus disorder prediction 145 195 - -
Pral559g00002 252 SMART PHD_3 198 246 IPR001965 -
Pral559g00002 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Pral559g00002 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 251 IPR013083 -
Pral559g00002 252 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Pral559g00002 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Pral559g00002 252 Pfam PHD-finger 199 248 IPR019787 -
Pral559g00002 252 CDD PHD_AL_plant 199 248 IPR044104 -
Pral559g00002 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Pral559g00002 252 FunFam PHD finger alfin-like protein 191 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral559g00002 Pral-Chr559 3439 8025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral559g00002 1 249 Alfin-like Transcription Factor Family AT1G14510 82.329 4.40e-136 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral559g00002 Alfin 8e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral559g00002 K26274 - gmx:100170698 442.195