LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5598g00020	ATGATTAGTGGAGGTGATGCTCCAAAAATGCCCAAAGGTCGGCGGTCCATGTTTGCAGTTGAAGAAGCAAGTTGCAAAGGTGAGGTTGGAGGAGACATACCTCTGAAGAAAGGCCCTTGGACAGCAGCAGAGGATGCAATTTTAATAGATTATGTCAAAAAACATGGAGAAGGAAATTGGAATGCAGTCCAAAAGCACTCAGGCCTTGCCCGCTGTGGAAAAAGCTGCCGTTTACGATGGGCAAATCACTTGAGGCCAGAATTAAAAAAGGGTGCATTTACTGAAGAGGAGGAGCGTCGAATCATTGAGCTCCATGCTAGGATGGGAAACAAATGGGCTCGAATGGCAACAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAATTACTGGAACACTAGAATTAAGAGACTGCAACGAGCTGGATTACCAATTTATCCTCCTGACATATGCCAGCGGGTACGCAGTCAAGAAAATCCAAATATGAGTACTTTGATGAGTGGAGCCAGCCAACACTCTGATATCCCGCAAGGAGGCAACTTCAAAGTCCCAGAACTGGATTTCAAAGAATATGATTTCAGTCGGAGTTATCTCCCATATGGTCCATCTATTTTAGATATTCCTGACAGCAGTCTGTTTGAACAAACTGTAGGCCCACCACATAGTGATGTTATGTTGTTCGGAAACCCTCCGAAACGCCTTAGGGAGTCAGATATGCTTTATAATAGATTGGACAATAGTAGCAGCTGTATGATCCCAGTGTTTGATAAGTTTGTGGATTATACTGCTGAGCCACCTCCTGTTTTGCCGTCTCCAGGCAATCTGTCCCTTGACACCAATGATCCGTTTCATGGTGATAATCTTCATGGCAGCCATGCCGCTTTAAATGGCACTATCTCTTCTTCAGCGCCCATATCTGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTAGCTGGGATGCAAATGCATCCCCACTTCCTTCACTTGAGTCCGTTGATACATTGTTTCAGTCTTCTCCTGTTGAACAATACCAGTCATGTACTGTTACTCCAGATAGTAGTGGTTTGTTAGAATCAATAATCTACGACACCAAGCTTCCCAAGGGCCCATACAATGATTCGTTGTGGAAGACTCCTGATGACTGCATACTGAATATGGCTAAAACTGAGACAGAATGGGACCACCATGGGGATACAAATTCACCCTTAGGTCACTCTTCTGCCTCAGTTCTTACAGATTATACTCCTCCTGTTAGCTTCTGCTCAGTTGATGAACCCAACTTCATTGAACATGCAAAAGCAGGTCTTGAAATGAAGCAGGAAGTAATTTCACAGGGTCCACCTAACGTTTCTCAAAGGAAAGAAACTTCTAGTCAGATAGACATAACAAGGCCAGATGCTTTGCTTGACATGTGTTGGTTCGGCAATGACACCAGTTACCGCTAA	1467	0.441	MISGGDAPKMPKGRRSMFAVEEASCKGEVGGDIPLKKGPWTAAEDAILIDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPELKKGAFTEEEERRIIELHARMGNKWARMATELPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDICQRVRSQENPNMSTLMSGASQHSDIPQGGNFKVPELDFKEYDFSRSYLPYGPSILDIPDSSLFEQTVGPPHSDVMLFGNPPKRLRESDMLYNRLDNSSSCMIPVFDKFVDYTAEPPPVLPSPGNLSLDTNDPFHGDNLHGSHAALNGTISSSAPISEAMKLELPSLQYLETQQGSWDANASPLPSLESVDTLFQSSPVEQYQSCTVTPDSSGLLESIIYDTKLPKGPYNDSLWKTPDDCILNMAKTETEWDHHGDTNSPLGHSSASVLTDYTPPVSFCSVDEPNFIEHAKAGLEMKQEVISQGPPNVSQRKETSSQIDITRPDALLDMCWFGNDTSYR	488

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral5598g00020	488	FunFam	Transcription factor GAMYB	92	138	-	-
Pral5598g00020	488	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	32	84	IPR017930	-
Pral5598g00020	488	ProSiteProfiles	Myb-like domain profile.	32	84	IPR001005	-
Pral5598g00020	488	SUPERFAMILY	Homeodomain-like	34	131	IPR009057	-
Pral5598g00020	488	CDD	SANT	39	84	IPR001005	-
Pral5598g00020	488	Gene3D	-	92	161	-	-
Pral5598g00020	488	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	24	485	-	-
Pral5598g00020	488	Gene3D	-	36	89	-	-
Pral5598g00020	488	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	85	139	IPR017930	-
Pral5598g00020	488	SMART	sant	36	86	IPR001005	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5598g00020	Pral-Chr5598	293386	300446	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5598g00020	23	481	MYB Transcription Factor Family	AT5G06100	37.657	2.96e-84	267

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pral5598g00020		Myb_DNA-binding	7.9e-15	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5598g00020	K09422		-	qsa:O6P43_014646	568.54

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