Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5598g00019 ATGATTAGTGGAGGTGATGCTCCAAAAATGCCCAAAGGTCGGCGGTCCATGTTTGCAGTTGAAGAAGCAAGTTGCAAAGGTGAGGTTGGAGGAGACATACCTCTGAAGAAAGGCCCTTGGACAGCAGCAGAGGATGCAATTTTAATAGATTATGTCAAAAAACATGGAGAAGGAAATTGGAATGCAGTCCAAAAGCACTCAGGCCTTGCCCGCTGTGGAAAAAGCTGCCGTTTACGATGGGCAAATCACTTGAGGCCAGAATTAAAAAAGGGTGCATTTACTGAAGAGGAGGAGCGTCGAATCATTGAGCTCCATGCTAGGATGGGAAACAAATGGGCTCGAATGGCAACAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAATTACTGGAACACTAGAATTAAGAGACTGCAACGAGCTGGATTACCAATTTATCCTCCTGACATATGCCAGCGGGTACGCAGTCAAGAAAATCCAAATATGAGTACTTTGATGAGTGGAGCCAGCCAACACTCTGATATCCCGCAAGGAGGCAACTTCAAAGTCCCAGAACTGGATTTCAAAGAATATGATTTCAGTCGGAGTTATCTCCCATATGGTCCATCTATTTTAGATATTCCTGACAGCAGTCTGTTTGAACAAACTGTAGGCCCACCACATAGTGATGTTATGTTGTTCGGAAACCCTCCGAAACGCCTTAGGGAGTCAGATATGCTTTATAATAGATTGGACAATAGTAGCAGCTGTATGATCCCAGTGTTTGATAAGTTTGTGGATTATACTGCTGAGCCACCTCCTGTTTTGCCGTCTCCAGGCAATCTGTCCCTTGACACCAATGATCCGTTTCATGGTGATAATCTTCATGGCAGCCATGCCGCTTTAAATGGCACTATCTCTTCTTCAGCGCCCATATCTGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTAGCTGGGATGCAAATGCATCCCCACTTCCTTCACTTGAGTCCGTTGATACATTGTTTCAGTCTTCTCCTGTTGAACAATACCAGTCATGTACTGTTACTCCAGATAGTAGTGGTTTGTTAGAATCAATAATCTACGACACCAAGCTTCCCAAGGGCCCATACAATGATTCGTTGTGGAAGACTCCTGATGACTGCATACTGAATATGGCTAAAACTGAGACAGAATGGGACCACCATGGGGATACAAATTCACCCTTAGGTCACTCTTCTGCCTCAGTTCTTACAGATTATACTCCTCCTGTTAGCTTCTGCTCAGTTGATGAACCCAACTTCATTGAACATGCAAAAGGTCTTGAAATGAAGCAGGAAGTAATTTCACAGGGTCCACCTAACGTTTCTCAAAGGAAAGAAACTTCTAGTCAGATAGACATAACAAGGCCAGATGCTTTGCTTGACATGTGTTGGTTCGGCAATGACACCAGTTACCGCTAA 1464 0.4406 MISGGDAPKMPKGRRSMFAVEEASCKGEVGGDIPLKKGPWTAAEDAILIDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPELKKGAFTEEEERRIIELHARMGNKWARMATELPGRTDNEIKNYWNTRIKRLQRAGLPIYPPDICQRVRSQENPNMSTLMSGASQHSDIPQGGNFKVPELDFKEYDFSRSYLPYGPSILDIPDSSLFEQTVGPPHSDVMLFGNPPKRLRESDMLYNRLDNSSSCMIPVFDKFVDYTAEPPPVLPSPGNLSLDTNDPFHGDNLHGSHAALNGTISSSAPISEAMKLELPSLQYLETQQGSWDANASPLPSLESVDTLFQSSPVEQYQSCTVTPDSSGLLESIIYDTKLPKGPYNDSLWKTPDDCILNMAKTETEWDHHGDTNSPLGHSSASVLTDYTPPVSFCSVDEPNFIEHAKGLEMKQEVISQGPPNVSQRKETSSQIDITRPDALLDMCWFGNDTSYR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5598g00019 487 FunFam Transcription factor GAMYB 92 138 - -
Pral5598g00019 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Pral5598g00019 487 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Pral5598g00019 487 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Pral5598g00019 487 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Pral5598g00019 487 SUPERFAMILY Homeodomain-like 34 131 IPR009057 -
Pral5598g00019 487 CDD SANT 39 84 IPR001005 -
Pral5598g00019 487 Gene3D - 92 161 - -
Pral5598g00019 487 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 484 - -
Pral5598g00019 487 Gene3D - 36 89 - -
Pral5598g00019 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Pral5598g00019 487 SMART sant 36 86 IPR001005 -
Pral5598g00019 487 SMART sant 89 137 IPR001005 -
Pral5598g00019 487 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pral5598g00019 487 FunFam MYB-related transcription factor 36 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5598g00019 Pral-Chr5598 293386 300446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5598g00019 23 480 MYB Transcription Factor Family AT5G06100 38.235 1.96e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5598g00019 Myb_DNA-binding 7.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5598g00019 K09422 - qsa:O6P43_014646 571.622