Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5598g00018 ATGGATTCTGACGAAGAAAATAGGGTTCTTTTTTATCGGCAAGTTAAGTCTCACGGTGATGGATTTGATCAGATGATCGAGGACCAGAAGGATAACGAAGGGTTCGATCAGGGATCTTCCGACGAGTTACAGAAGATGAGCGAAAAGCCGTTTTCGTCTTACTTGGAGCTCCGCGAAGGAAAATCTGAGAGTAAAACTAACGGAGCTTCAGCTTCAGGTTCGTCATCAGTTCGAGTTTGTGATTTCTGTGGAAGAGAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCACATTCAAGCTCAGAAAAAGATGGAGGCGCAGAGTCAGGCTCAAGAACGAGAAAAGGTGAATCGTCATCAATATCCTTCAAATAATTATACCCTAAGAATCAAGCCCAATAATATCTCCGAGGATTGCGTCGGCGATGATAATCTCATCATCAAATCGAACATTGGGAATCTCAATTCTTCGAGATCTTTCCGTTGTTGTGTCTGCGACAAGAATTTCCCCTCCAAGAAGTCATTGTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCTTTCACTGATCACGTTCTGGCTTCTTCTTCTTCTGCAGAAGTCTTCAAAGTAGAAGATAAGTATCAAGATAATGATGAAGTTAATCTTAACAACAATAATGGATCTTCATCTTCAACTTTAGAAGAGTCAGTAGTAGTTGATCTTTCTTCATCTTGTTCTGGAAGTAGCTGGCGCAAGAAAGATAGAAGAGGAAGAAAAAGCATTGGAGCTGCAGAAGCAGCTCAAACCCTTATTGAGATGTATCTCTATGGAAGCTACGAGCCACTATTACCAGTGAAGAAAAGGAATAGGGATGTGAATGATGTTGGTTCTTCACAACCTGGAAAACAAAGCTCGGATTACAAGGAGAAGCTAGAGTTAAAAGCTGATGAGAATAATATCTGGGAGATGAAAGTGATCAGCTTAATGAAAGAGAAGAAGCTTAGGAAGAAGAACAAGAAGTTAAAGAAAGGTCCAGAGATTATCAAGTCAGAAGGAGAAGTGCTGATAAGAACTCTGAAGGAAGAAGTGAAAAAGTCACAAAGCTATGTCTGTGACATCTGTAATAAACCTTTCTCGAGTTTTCAAGCTTTAGGGGGACACAAATCCAAACACAACAGAGGAAAGAACATAGTTATAAGCACCAAGGGGAAGGAAGTAGTGGAAGAACAAAGAGGAGGAGGAGGAGAAGCAGAAGAAGAAGAGGACAAGGTTTGCATCAATGGAGCTTTGTCAAGTGCAGGACTGATGAGTTGTGAAGAAGAAGAGGACGAAGAAGAAGAAGGAGAAGGAGCGTCTCTGATTGTTAGTGAAGAGAGATTAGGATCAAGTTCGAATGATCAAGAGAATAACAGTAATGAAGAGGAATTGGGAGAGGCAAGTCATCAATCTGCAGGTTCGAAAATTCTGGATTTTGATCTGAATGTGCCTTATGTTTCGGAGCACGAAGTAACTGATGATATATAA 1533 0.411 MDSDEENRVLFYRQVKSHGDGFDQMIEDQKDNEGFDQGSSDELQKMSEKPFSSYLELREGKSESKTNGASASGSSSVRVCDFCGREFSSGKALGGHRRYHIQAQKKMEAQSQAQEREKVNRHQYPSNNYTLRIKPNNISEDCVGDDNLIIKSNIGNLNSSRSFRCCVCDKNFPSKKSLFGHMRSHPEREWRGMNPPFTDHVLASSSSAEVFKVEDKYQDNDEVNLNNNNGSSSSTLEESVVVDLSSSCSGSSWRKKDRRGRKSIGAAEAAQTLIEMYLYGSYEPLLPVKKRNRDVNDVGSSQPGKQSSDYKEKLELKADENNIWEMKVISLMKEKKLRKKNKKLKKGPEIIKSEGEVLIRTLKEEVKKSQSYVCDICNKPFSSFQALGGHKSKHNRGKNIVISTKGKEVVEEQRGGGGEAEEEEDKVCINGALSSAGLMSCEEEEDEEEEGEGASLIVSEERLGSSSNDQENNSNEEELGEASHQSAGSKILDFDLNVPYVSEHEVTDDI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5598g00018 510 MobiDBLite consensus disorder prediction 439 487 - -
Pral5598g00018 510 SMART c2h2final6 163 185 IPR013087 -
Pral5598g00018 510 SMART c2h2final6 78 100 IPR013087 -
Pral5598g00018 510 SMART c2h2final6 372 394 IPR013087 -
Pral5598g00018 510 MobiDBLite consensus disorder prediction 20 38 - -
Pral5598g00018 510 MobiDBLite consensus disorder prediction 405 425 - -
Pral5598g00018 510 Gene3D Classic Zinc Finger 78 185 - -
Pral5598g00018 510 Pfam C2H2-type zinc finger 163 187 - -
Pral5598g00018 510 Pfam C2H2-type zinc finger 372 394 - -
Pral5598g00018 510 Pfam C2H2-type zinc finger 78 100 - -
Pral5598g00018 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 372 399 IPR013087 -
Pral5598g00018 510 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Pral5598g00018 510 MobiDBLite consensus disorder prediction 440 454 - -
Pral5598g00018 510 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 62 116 IPR044653 GO:0003700
Pral5598g00018 510 MobiDBLite consensus disorder prediction 20 74 - -
Pral5598g00018 510 SUPERFAMILY beta-beta-alpha zinc fingers 161 394 IPR036236 -
Pral5598g00018 510 ProSitePatterns Zinc finger C2H2 type domain signature. 374 394 IPR013087 -
Pral5598g00018 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Pral5598g00018 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Pral5598g00018 510 MobiDBLite consensus disorder prediction 388 425 - -
Pral5598g00018 510 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5598g00018 Pral-Chr5598 281815 283422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5598g00018 79 196 C2H2 Transcription Factor Family AT2G26940 30.081 8.19e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5598g00018 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5598g00018 - - pcin:129302761 511.146