Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5598g00015 ATGTCAACCGGACCAACACACTGGTGTTATGAGTGTGGGCATCCGATTGCACTTGAAGGCAGAGAGGTCATTTGCCCTTACTGTCATGAAGGCTTTGTGCAAGAACTTAATGAGAGGCATGGGTTTCAACCATATAACGCTCTTGAAGATTTTCATCACATGCCCGATTTTTTTGATGCCATACATGCCTTTATGGCGCAGAGAGTTTCTGAACCAAGATTCGGGCTTGTAGATGCTTTTGACAATTTCAGGAGGCAGAGAATAGCTGGGCAATTCCCCAACATTGATGTTAGACAAAGAGCTGATACTGCACTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCATGTTTCATGGTAGTGGAGGGGAGCCCAGGCCTATTGATTTTGGTGGTTTGTTGATGGCCCCTGGACTGGAAGCATTTATTCAACAGCTCACCATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCCTCAATTGATGCAATGCCTACTATTAAGATCACGCGAGCGCATCTTCGCTCTGATTCACAATGTCCGGTCTGTCAAGAAAAATTCGAGCTAGGCACCGAGGCAAGGCAGATGCCTTGTAACCATATTTATCACTCTGACTGTATTGTTCCCTGGTTGGTTCGGCATAACTCTTGTCCTGTTTGCCGTATTGAGCTGCCGCCTCCAGGACAGGGTAGCTCTCGTGGTGGAAGTCATGGAGGTAGGAATGTCAGTAGCAGCAGCATCCATGGTAGCTCGAGGAGACCGAACCAAGGAAGGAGAAATTCGCTATCATCTTGGTGGCCATTCTGA 822 0.4696 MSTGPTHWCYECGHPIALEGREVICPYCHEGFVQELNERHGFQPYNALEDFHHMPDFFDAIHAFMAQRVSEPRFGLVDAFDNFRRQRIAGQFPNIDVRQRADTALFPEWSQDFFNSGPSFMFHGSGGEPRPIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITRAHLRSDSQCPVCQEKFELGTEARQMPCNHIYHSDCIVPWLVRHNSCPVCRIELPPPGQGSSRGGSHGGRNVSSSSIHGSSRRPNQGRRNSLSSWWPF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5598g00015 273 MobiDBLite consensus disorder prediction 239 273 - -
Pral5598g00015 273 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Pral5598g00015 273 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Pral5598g00015 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 230 - -
Pral5598g00015 273 MobiDBLite consensus disorder prediction 231 273 - -
Pral5598g00015 273 Pfam Ring finger domain 184 226 IPR001841 -
Pral5598g00015 273 SMART ring_2 185 225 IPR001841 -
Pral5598g00015 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Pral5598g00015 273 SUPERFAMILY RING/U-box 165 232 - -
Pral5598g00015 273 CDD RING-H2_RNF126-like 184 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5598g00015 Pral-Chr5598 243762 246904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5598g00015 110 273 C3H Transcription Factor Family AT1G68180 32.317 1.36e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5598g00015 K11982 - qsa:O6P43_020907 346.665