Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5598g00014 ATGCATGGGATGCTTCCGCTTCCCTATGTCCATCGTCGAAGGTGTTTTTGTTTCTACTTCTATTTTCTTATTCACTGCATTATATGTGATGATGCTGCAGATTACTATTCGGATTCAGGGTTAAACAAAAAAAAAAAAAGATTACTATTTGGACAAATGCATCCGAGAGATCGACTTATTGAAATGTCTTCCGCCGCTAAAGAAGAATCTTGCCCGAGCTCCTTTACTTGTAGTTCAACCTTAAAATGGGAGTTTGATGTTTTCTTGAGTTTTGCAGGGAGAGATACTCGCTTAAATTTCACGGATCACTTATGTGATGCTTTCATTAGAAGTGGCATCAGATGTTTTAGGGATGATAAAGGAATAAAGAAAGGGGAAGTTATTAAACAACAACTCATTCAAGCCATCAAGGATTCTCTCTGTGCTGTTGTTGTTCTCTCCGAAAATTATGCAAATTCTACATGGTGCTTGGATGAACTTGAGGAGATTCTTGAATCTCGAAAAAAATTTGGAGGACAAGTTTTTCCTGTCTTCTATGGTGTAGATCCATCTGATGTAAGATATCAAAGAAGAAGTTTCGGAAAAGCTTTAGCCAACCATGAAAAGAAATGCAAAAAAAGCGAAGACAAGGTTCACAAATGGAGATCCGCTTTGTCGCAGGTTAGCAATCTGTCTGGCTGGGACGCTAGAAGTCGGAATGAAGCAGAAGTCATTCGAGAGATTGTTGAAACAGTATGGAACATTGTATGCTCTAGTTTGCCATCTTATGATGATAATTTAGTTGGAATTGAGTCAAGGATGGTTAAGATAAATGCTCTCTTAGAGATAGAGGCAGATAGCATCTGTTTTGTAGGGATATGGGGTATGGGCGGCATTGGTAAGACAACTCTTGCTAGACTTGTTTTTGAGAGAATCTCTGGCCAATTTGAAATATCCTGCTTTCTTGCTAATGTTAGGGAGATTTCAGAAAGAAAAGGCATAGTTAGTTTACAAAATGATATTCTTTTACATCTCAACAAAGGGCAAAAGATATATGACGAGCATTGTGGAAAACGATTTTGA 1062 0.3795 MHGMLPLPYVHRRRCFCFYFYFLIHCIICDDAADYYSDSGLNKKKKRLLFGQMHPRDRLIEMSSAAKEESCPSSFTCSSTLKWEFDVFLSFAGRDTRLNFTDHLCDAFIRSGIRCFRDDKGIKKGEVIKQQLIQAIKDSLCAVVVLSENYANSTWCLDELEEILESRKKFGGQVFPVFYGVDPSDVRYQRRSFGKALANHEKKCKKSEDKVHKWRSALSQVSNLSGWDARSRNEAEVIREIVETVWNIVCSSLPSYDDNLVGIESRMVKINALLEIEADSICFVGIWGMGGIGKTTLARLVFERISGQFEISCFLANVREISERKGIVSLQNDILLHLNKGQKIYDEHCGKRF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5598g00014 353 Pfam NB-ARC domain 271 341 IPR002182 GO:0043531
Pral5598g00014 353 ProSiteProfiles TIR domain profile. 83 249 IPR000157 GO:0007165
Pral5598g00014 353 Gene3D - 249 350 IPR027417 -
Pral5598g00014 353 FunFam Disease resistance protein (TIR-NBS-LRR class) 81 251 - -
Pral5598g00014 353 SUPERFAMILY Toll/Interleukin receptor TIR domain 78 227 IPR035897 -
Pral5598g00014 353 Gene3D - 77 248 IPR035897 -
Pral5598g00014 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 340 IPR027417 -
Pral5598g00014 353 Pfam TIR domain 85 257 IPR000157 GO:0007165
Pral5598g00014 353 SMART till_3 84 224 IPR000157 GO:0007165
Pral5598g00014 353 Coils Coil 197 217 - -
Pral5598g00014 353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 86 339 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5598g00014 Pral-Chr5598 240921 242676 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5598g00014 84 335 WRKY Transcription Factor Family AT4G12020 26.877 1.30e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5598g00014 - - pcin:129301634 417.927