Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5598g00008 ATGGCACATACTGCCAGAGGAGAATCTTCTTCCAGCTCTGATCCTCGTTATTCAACTCCTAACTGGAAATATGATGTGTTCTTGAGTTTTACAGGGAAAGACACTCGCTTGAAGTTTCTGGATCACTTAGATAAAGCTTTTGAAAGAAGTGGCATCAAAACATTTAAGGATGATAAAGATCTTGAGAGAGGGAAAGTCATAAAAGAAGATCTGTTGCAAGCAATCGAGGATTCTCTCTGTGCAGTTGTTGTTATCTCTGAAAATTATGCAAAATCTACGTGGTGTTTAGAGGAGCTTCAAAAGATCCTTAAAGCTTCAGAAATATTGGATCGACGGGTTTTTCCCATATTCTATGATGTTGATCCAGCCGATGTAAGACACCAACGAAAACGCTTTCAGGAAGCCATGGATGAACATGAAGACAGATTCAGAGAGGACAATGTGAAAGTGCATACTTGGAGAAGTGCATTGTGTGAAATTGCCAACTTGTCTGGTTGGGACACCAGGGGCAGGCAGGAAGCAGATCTTATAGAAGAAATAGTCAGAGAGGTATGGGCTTACATAATTCCTAAATTACCATCTCATGTTGACAATCTAGTTGGGATTGAGTCAAGAGCACGTGATATAATGTCTCTCTTGGAGATTGGGGTGGATGACAGACGTTTTGTGGGGATATGGGGTATGGGCGGTGTGGGTAAAACAACTCTTGCTAGAGTTGTTTTTGAAAAACTATCCCACAAATTTGAAGTGTGTTGCTTTCTTGTCAATGTTAGAGAAACATTTGAAAAAGAAGGCCACGTTGTCTCTTTGCAAAGAAAGCTTCTTTCTCCTCTCAAAATAAAAGGCATGGAAATTTCTGATGATTACGAAGGAATGAAGATGATAACAAAGCTTCTCTGCAGTAAAAAGGTTCTTCTAGTCATTGATGATGTAGATCATCAGAAACAATTAAATAATTTGGCTAAAAGTCCATATTGGTTTGGTAAAGGAAGCAGAATAATTTTTACAACAAGAGATAAGCACTTGCTCACCTCGTTTGAAGTAGATGAGCAAAGAATATATGAGATGAAAACCATGGAGGGAGATGAATCTCTTCAACTCTTTTCAAACAAAGCATTCAACAAAGGCCATCCTCCTGATGAGGCTTATTGGAAATTATCTAAATCTGTAGTTGAACAAGCAGCTGGTCTTCCTTTGGCACTTGAAGTTTTGGGTTATTTTCTTCGCGGAAGAGAAAAAGATAAGTGGATAGGTGCTTTAGATAAATTAAAGAAAAGTTATATTGATAAAGATATTTATCCAGTGCTTAAAATAAGTTATGATGGATTGGATGAGCAACAACAGAGGTCTTGA 1353 0.3814 MAHTARGESSSSSDPRYSTPNWKYDVFLSFTGKDTRLKFLDHLDKAFERSGIKTFKDDKDLERGKVIKEDLLQAIEDSLCAVVVISENYAKSTWCLEELQKILKASEILDRRVFPIFYDVDPADVRHQRKRFQEAMDEHEDRFREDNVKVHTWRSALCEIANLSGWDTRGRQEADLIEEIVREVWAYIIPKLPSHVDNLVGIESRARDIMSLLEIGVDDRRFVGIWGMGGVGKTTLARVVFEKLSHKFEVCCFLVNVRETFEKEGHVVSLQRKLLSPLKIKGMEISDDYEGMKMITKLLCSKKVLLVIDDVDHQKQLNNLAKSPYWFGKGSRIIFTTRDKHLLTSFEVDEQRIYEMKTMEGDESLQLFSNKAFNKGHPPDEAYWKLSKSVVEQAAGLPLALEVLGYFLRGREKDKWIGALDKLKKSYIDKDIYPVLKISYDGLDEQQQRS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5598g00008 450 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 166 IPR035897 -
Pral5598g00008 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 449 IPR027417 -
Pral5598g00008 450 Gene3D - 188 354 IPR027417 -
Pral5598g00008 450 Pfam NB-ARC domain 217 441 IPR002182 GO:0043531
Pral5598g00008 450 PRINTS Disease resistance protein signature 394 408 - -
Pral5598g00008 450 PRINTS Disease resistance protein signature 298 312 - -
Pral5598g00008 450 PRINTS Disease resistance protein signature 222 237 - -
Pral5598g00008 450 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 189 - -
Pral5598g00008 450 Gene3D - 359 444 IPR042197 -
Pral5598g00008 450 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Pral5598g00008 450 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 447 IPR044974 GO:0006952
Pral5598g00008 450 Gene3D - 17 187 IPR035897 -
Pral5598g00008 450 Pfam TIR domain 23 186 IPR000157 GO:0007165
Pral5598g00008 450 SMART till_3 23 163 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5598g00008 Pral-Chr5598 226144 230466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5598g00008 15 404 WRKY Transcription Factor Family AT4G12020 27.621 5.74e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5598g00008 - - pcin:129300043 548.51