Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5595g00023 ATGAAGAGAACTAGGGACGATACTTATGCTTCTTCTCAATTAAAGCGACCCATGGGTTCTTCACGCGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGGGGAGGGGGAGGGGGAGGGGGAACGGGAGGAGGAGGGGGAGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATCTGAAGGAAGTGAAAGACATGTTTCATGACCAAATAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCAGGTGTCATTGCAAGGGTGAAGGAACTATTCAAAGGGCATAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGTTATGAGATTACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATAAGCTTTGTAAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTCGCTACCCTTTTTGAGGATCATCCGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAGCGCCTTCTTCACAGCATGCTCCTTATGGTCGAAATTCATTTCCTCGATTTGGTGAGAGAGGCTCTACAGCACCCATGATACGGCCAATGCAAGTGGACAAGCACCGCTATCGACGGGAAAGGCTTAGTTCTCTTGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGATGATGACAAGGCACTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGATTTCAAACCACGATTTCCTGAGAAAAAGATATCTTCCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCATATGATGACAAAGATACCTTAAAGAGCATGTATAACCAGGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCCTTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAATGAGTTCTTGGAGCGTTGCGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGTGGTGATGGTCAATTATCCAGAACGTTAAAGTTGGAGGACAAAGACAAAGACCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTTGACTTAAGTAACTGTCAACTTTGTACTCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAACGATCATTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTACGAAGAAAGCTTGTTTCGATGTGAGGATGATAGATTTGAGCTGGACATGTTATTAGAATCTGTTAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTCTGGACATATTACGGAAACATCCAACTCATGCACTTCCTGTGGTATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGATCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACCTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAACAGAAAGAGTATGATATTCTTCACGCTATCGCTGCTGGAAATAGACAGCCTCTAATTCCACATCTAGAGTTTGAATATTCGGATGGTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAAGTCTTCTCGAGTAAAGATATGTCAAATAAAATTATGAGACTTTGGACCACCTTTTTGGAGTTGATTCTTGGTGTTCCCTCTCGTACTCATGGGACAGAAAATTTGGAGGACAGGAAAACTGGGCAACGTGTTGCCCATTTTGTTGCATCAAATACAGGAGGTGATGGAAACTCCCACGGAGACTCTATTCCTTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAATGAGGTGAAGAATGGCCAACAGACTAGCTTAGCCAATGACAAAGAAAATGGACCTGTTGACTGTGACCGTGCTTGTAGAGATGATGATAAAGGGAAGAACAATGCAGATTGTAGTGAAAGAGTCTCTGGGTTTAGTAAACAGATTGCCTCTGATGAGCAATCAATTATCAATAATACCTCAAGTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGCTGTGTGCTTAATCCAGCAAGATCAACTGCTACACTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTGATGGAGGGTCGTGATATTGCTCCTTCACTTCCATTTGCCAATGGAGTGCTAATTGAAAGCACTAAAGTTAAAAGCCATGAAGAAATAGCTGGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTGTTGGGTACGGAGACTCTGGTGGGCAGGCACTGCCCAAGTCAAAGCATAATAGTGAAAGAGGAAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGCCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGATAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGCGAAGCTGAGGGCATATGTGATGCTCAATCTGCTGGAGGAGAGGGCTTATCATTGCCATTATCAGAAAGGTTCCTTTTGTCTGTAAAGCCTCTCACGAAGCGTGTTTCCGCAGTTTCACTTGTTGAGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAAATATTCAATGAGTGCTGAAACAAAATGGAAAACAACAAAGGAGGCTTCTTCACCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGTAAAGTTTGAAGACGAATGTCGAGCAATTATTGGAAACCAGTCTTATATATTATTCACACTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACAGATGAGATAGACAATAAACTTCTCCAATTGTATGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAATCGATTCAGTCTATTATGCAAACGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTACTCCCTCTCGAGTGTTTGTTCAGCTGATGGACACTATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATCGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGAAAAAAAGAACCTCATGGCATTATCCTGCAAAGAAACAAGCGCGGATATGGAGATCTAGATGAACTTACATCTATGTGCTTAGCCATGGAAGGTGTTAAAATTATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCGTATGTTCTGGACACGGAAGATTTTTTCTACCGCCCCAAAAGGCAAAGAAGAACGTCATCAGGGACCACATCTTCCTGGTCCCGGCATCATCGGGCTAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAA 4164 0.4123 MKRTRDDTYASSQLKRPMGSSRGDSYGQSQIPGGGGGGGGGGTGGGGGATSQKLTTNDALSYLKEVKDMFHDQIEKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHPDLLEEFTRFLPDTSAAPSSQHAPYGRNSFPRFGERGSTAPMIRPMQVDKHRYRRERLSSLDRDPSVDRPELDDDKALMKSHKEQRKRVDKESRDRKIRDQDEREPDHDNNRDFKPRFPEKKISSKKAEGFGLAADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLGGDGQLSRTLKLEDKDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKHPTHALPVVLTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILHAIAAGNRQPLIPHLEFEYSDGGIHEDLYKLIRYSCEEVFSSKDMSNKIMRLWTTFLELILGVPSRTHGTENLEDRKTGQRVAHFVASNTGGDGNSHGDSIPSRLPKSDNEVDGRVNEVKNGQQTSLANDKENGPVDCDRACRDDDKGKNNADCSERVSGFSKQIASDEQSIINNTSSAVRGETSMTKTSLEITSGCVLNPARSTATLGGDDGVAISQGGNGPLMEGRDIAPSLPFANGVLIESTKVKSHEEIAGPYKAEKEEGELSPNADSEEDNFVGYGDSGGQALPKSKHNSERGNYKSRNGEEECCPEAGGDNGADADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDIERDDVEGKAESEGEAEGICDAQSAGGEGLSLPLSERFLLSVKPLTKRVSAVSLVEERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSMSAETKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRKPGKLIDSVYYANARVILHDENIYRFECSCTPSRVFVQLMDTMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIILQRNKRGYGDLDELTSMCLAMEGVKIINGLECKIACNSSKISYVLDTEDFFYRPKRQRRTSSGTTSSWSRHHRARQERFLRFLSVS 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 937 1056 - -
Pral5595g00023 1387 FunFam Paired amphipathic helix protein Sin3 58 120 - -
Pral5595g00023 1387 SUPERFAMILY PAH2 domain 341 407 IPR036600 GO:0006355
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 239 315 - -
Pral5595g00023 1387 FunFam Paired amphipathic helix protein SIN3 335 409 - -
Pral5595g00023 1387 Pfam Sin3 family co-repressor 475 565 IPR013194 -
Pral5595g00023 1387 SMART hdac_interact2seq4b 471 571 IPR013194 -
Pral5595g00023 1387 ProSiteProfiles PAH domain profile. 136 206 IPR003822 GO:0006355
Pral5595g00023 1387 SUPERFAMILY PAH2 domain 48 121 IPR036600 GO:0006355
Pral5595g00023 1387 FunFam Paired amphipathic helix SIN3-like protein 135 206 - -
Pral5595g00023 1387 Gene3D Paired amphipathic helix 135 207 IPR036600 GO:0006355
Pral5595g00023 1387 Pfam Paired amphipathic helix repeat 159 203 IPR003822 GO:0006355
Pral5595g00023 1387 Pfam Paired amphipathic helix repeat 360 404 IPR003822 GO:0006355
Pral5595g00023 1387 Pfam Paired amphipathic helix repeat 75 119 IPR003822 GO:0006355
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 434 455 - -
Pral5595g00023 1387 Gene3D Paired amphipathic helix 336 409 IPR036600 GO:0006355
Pral5595g00023 1387 Pfam C-terminal domain of Sin3a protein 1104 1352 IPR031693 -
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 978 994 - -
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 1 52 - -
Pral5595g00023 1387 SUPERFAMILY PAH2 domain 133 205 IPR036600 GO:0006355
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 770 797 - -
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 770 787 - -
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 11 28 - -
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 1001 1015 - -
Pral5595g00023 1387 ProSiteProfiles PAH domain profile. 338 407 IPR003822 GO:0006355
Pral5595g00023 1387 MobiDBLite consensus disorder prediction 206 315 - -
Pral5595g00023 1387 ProSiteProfiles PAH domain profile. 52 122 IPR003822 GO:0006355
Pral5595g00023 1387 PANTHER SIN3B-RELATED 52 1248 IPR039774 GO:0003714
Pral5595g00023 1387 Gene3D Paired amphipathic helix 58 120 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5595g00023 Pral-Chr5595 111530 127912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5595g00023 39 155 WRKY Transcription Factor Family AT4G12020 50.000 1.18e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5595g00023 Sin3a_C 1.4e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5595g00023 K11644 - gmx:100807181 2052.71