Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5595g00022 ATGAAGAGAACTAGGGACGATACTTATGCTTCTTCTCAATTAAAGCGACCCATGGGTTCTTCACGCGGGGATTCCTATGGCCAATCCCAAATCCCTGGAGGAGGGGGAGGGGGAGCTACTTCACAGAAATTGACTACCAATGACGCTTTATCATATCTGAAGGAAGTGAAAGACATGTTTCATGACCAAATAGAAAAATATGACATGTTCTTAGAGGTCATGAAAGATTTCAAGGCTCAACGGACTGACACTGCAGGTGTCATTGCAAGGGTGAAGGAACTATTCAAAGGGCATAATAACTTGATTTTTGGATTTAACACCTTCTTGCCAAAGGGTTATGAGATTACACTTGATGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATAAGCTTTGTAAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAACATGTACCGCAAAGAGCACAAGGATATTGGTGAGGTCTATAGTGAGGTCGCTACCCTTTTTGAGGATCATCCGGATTTACTTGAGGAGTTTACTAGATTCTTACCAGATACTTCTGCAGCGCCTTCTTCACAGCATGCTCCTTATGGTCGAAATTCATTTCCTCGATTTGGTGAGAGAGGCTCTACAGCACCCATGATACGGCCAATGCAAGTGGACAAGCACCGCTATCGACGGGAAAGGCTTAGTTCTCTTGATCGTGATCCAAGTGTTGATCGTCCTGAACTGGATGATGACAAGGCACTAATGAAATCTCACAAGGAGCAGAGGAAGCGTGTTGATAAGGAAAGTAGGGATAGGAAAATTCGTGACCAGGATGAGAGAGAACCTGATCATGATAATAACAGGGATTTCAAACCACGATTTCCTGAGAAAAAGATATCTTCCAAGAAGGCTGAAGGTTTTGGGTTGGCAGCTGATTTTGCTTCATATGATGACAAAGATACCTTAAAGAGCATGTATAACCAGGCATTCAGTTTTTGTGAGAAAGTTAAGGAAAAGTTGGGCAGTTCAGATGACTACCAAGCCTTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGATTTGCAGAATTTGGTGACTGACTTACTTGGAAAGTACCCTGATCTGATGGATGAATTCAATGAGTTCTTGGAGCGTTGCGAAAATATTGATGGGTTCCTTGCTGGTGTCATAAGTAAAAAGTCATTAGGTGGTGATGGTCAATTATCCAGAACGTTAAAGTTGGAGGACAAAGACAAAGACCAGAAGCGTGAGATGAATGGAGCTAAAGACAAGGAAAGACACCGGGAGAAATACTGGGGAAAATCCATTCAAGAACTTGACTTAAGTAACTGTCAACTTTGTACTCCAAGCTATCGTCTTCTGCCAGAAGATTATCCAATTCCTGTGGCCAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAACGATCATTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTACGAAGAAAGCTTGTTTCGATGTGAGGATGATAGATTTGAGCTGGACATGTTATTAGAATCTGTTAGCTCAGCTGCCAAATGTGCAGAGGAGTTGTATAATAGCATTAATGAAAATAAGATCAATATGGAGGCTCCAATCTGTATTGAAGATCACTTTAGCGCTCTAAATTTAAGGTGCATTGAACGCCTGTATGGAGATCATGGACTTGATGTTCTGGACATATTACGGAAACATCCAACTCATGCACTTCCTGTGGTATTGACTCGTCTGAAGCAGAAACAAGAGGAGTGGAGTAGGTGTCGATCTGATTTCAATAAGGTTTGGGCTGAAATTTATGCTAAAAACCACTACAAATCACTTGATCATCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACCTGAGCACTAAATCTTTGGTGGCTGAAATCAAAGAAAAGAAAGCAAAGCAACAGAAAGAGTATGATATTCTTCACGCTATCGCTGCTGGAAATAGACAGCCTCTAATTCCACATCTAGAGTTTGAATATTCGGATGGTGGGATTCATGAGGACCTATATAAACTTATTCGTTATTCATGTGAGGAAGTCTTCTCGAGTAAAGATATGTCAAATAAAATTATGAGACTTTGGACCACCTTTTTGGAGTTGATTCTTGGTGTTCCCTCTCGTACTCATGGGACAGAAAATTTGGAGGACAGGAAAACTGGGCAACGTGTTGCCCATTTTGTTGCATCAAATACAGGAGGTGATGGAAACTCCCACGGAGACTCTATTCCTTCAAGGTTGCCAAAATCTGATAATGAAGTGGATGGTAGAGTAAATGAGGTGAAGAATGGCCAACAGACTAGCTTAGCCAATGACAAAGAAAATGGACCTGTTGACTGTGACCGTGCTTGTAGAGATGATGATAAAGGGAAGAACAATGCAGATTGTAGTGAAAGAGTCTCTGGGTTTAGTAAACAGATTGCCTCTGATGAGCAATCAATTATCAATAATACCTCAAGTGCAGTTAGAGGAGAAACTAGCATGACCAAGACCAGCTTAGAAATTACTTCAGGCTGTGTGCTTAATCCAGCAAGATCAACTGCTACACTAGGCGGTGATGATGGTGTTGCCATTTCTCAGGGTGGTAATGGACCTTTGATGGAGGGTCGTGATATTGCTCCTTCACTTCCATTTGCCAATGGAGTGCTAATTGAAAGCACTAAAGTTAAAAGCCATGAAGAAATAGCTGGACCTTACAAAGCTGAAAAGGAGGAGGGTGAATTATCACCCAATGCTGACTCAGAGGAGGATAATTTTGTTGGGTACGGAGACTCTGGTGGGCAGGCACTGCCCAAGTCAAAGCATAATAGTGAAAGAGGAAATTATAAATCTAGAAATGGGGAGGAAGAATGCTGCCCAGAGGCTGGAGGTGATAATGGTGCAGATGCTGATGATGAGGACAGTGATAATGTTTCTGAAGCTGGTGAAGATGCCTCAGGTAGTGAGTCTGCTGGTGATGCATGCTCTCGAGAAGAGCATGAGGAGGATGAAGATATAGAACGTGATGATGTTGAGGGTAAGGCTGAGAGTGAAGGCGAAGCTGAGGGCATATGTGATGCTCAATCTGCTGGAGGAGAGGGCTTATCATTGCCATTATCAGAAAGGTTCCTTTTGTCTGTAAAGCCTCTCACGAAGCGTGTTTCCGCAGTTTCACTTGTTGAGGAAAGAAATAATTCCAGGGTCTTCTATGGAAATGATGATTTTTTTGTTCTTTTTAGGCTTCATCAAATACTTTATGAAAGGATCTCATTAGCGAAAAAATATTCAATGAGTGCTGAAACAAAATGGAAAACAACAAAGGAGGCTTCTTCACCAGATCCTTATTCAAGATTTATGAATGCACTTTACAACTTGCTTGATGGCTCTGCTGACAATGTAAAGTTTGAAGACGAATGTCGAGCAATTATTGGAAACCAGTCTTATATATTATTCACACTGGACAAGTTGATATATAAGTTGGTCAGACAGCTTCAAACAGTTGTAACAGATGAGATAGACAATAAACTTCTCCAATTGTATGAGTATGAAAAGTCTCGGAAACCTGGGAAATTAATCGATTCAGTCTATTATGCAAACGCACGTGTCATCCTTCATGATGAGAATATATATCGTTTTGAATGTTCATGTACTCCCTCTCGAGTGTTTGTTCAGCTGATGGACACTATGAATGAAAAGCCTGAGGTGTTTGCTGTTTCAATCGATCCAAATTTTTCCTTTTATCTGTATAATGATTTTCTGTCTGTCTCTCCTGGAAAAAAAGAACCTCATGGCATTATCCTGCAAAGAAACAAGCGCGGATATGGAGATCTAGATGAACTTACATCTATGTGCTTAGCCATGGAAGGTGTTAAAATTATAAATGGATTGGAATGTAAGATAGCTTGCAACTCGTCCAAGATCTCGTATGTTCTGGACACGGAAGATTTTTTCTACCGCCCCAAAAGGCAAAGAAGAACGTCATCAGGGACCACATCTTCCTGGTCCCGGCATCATCGGGCTAGACAGGAAAGATTTCTCAGATTCTTATCAGTTTCATAA 4134 0.4098 MKRTRDDTYASSQLKRPMGSSRGDSYGQSQIPGGGGGGATSQKLTTNDALSYLKEVKDMFHDQIEKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFEDHPDLLEEFTRFLPDTSAAPSSQHAPYGRNSFPRFGERGSTAPMIRPMQVDKHRYRRERLSSLDRDPSVDRPELDDDKALMKSHKEQRKRVDKESRDRKIRDQDEREPDHDNNRDFKPRFPEKKISSKKAEGFGLAADFASYDDKDTLKSMYNQAFSFCEKVKEKLGSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKYPDLMDEFNEFLERCENIDGFLAGVISKKSLGGDGQLSRTLKLEDKDKDQKREMNGAKDKERHREKYWGKSIQELDLSNCQLCTPSYRLLPEDYPIPVASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKCAEELYNSINENKINMEAPICIEDHFSALNLRCIERLYGDHGLDVLDILRKHPTHALPVVLTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEKKAKQQKEYDILHAIAAGNRQPLIPHLEFEYSDGGIHEDLYKLIRYSCEEVFSSKDMSNKIMRLWTTFLELILGVPSRTHGTENLEDRKTGQRVAHFVASNTGGDGNSHGDSIPSRLPKSDNEVDGRVNEVKNGQQTSLANDKENGPVDCDRACRDDDKGKNNADCSERVSGFSKQIASDEQSIINNTSSAVRGETSMTKTSLEITSGCVLNPARSTATLGGDDGVAISQGGNGPLMEGRDIAPSLPFANGVLIESTKVKSHEEIAGPYKAEKEEGELSPNADSEEDNFVGYGDSGGQALPKSKHNSERGNYKSRNGEEECCPEAGGDNGADADDEDSDNVSEAGEDASGSESAGDACSREEHEEDEDIERDDVEGKAESEGEAEGICDAQSAGGEGLSLPLSERFLLSVKPLTKRVSAVSLVEERNNSRVFYGNDDFFVLFRLHQILYERISLAKKYSMSAETKWKTTKEASSPDPYSRFMNALYNLLDGSADNVKFEDECRAIIGNQSYILFTLDKLIYKLVRQLQTVVTDEIDNKLLQLYEYEKSRKPGKLIDSVYYANARVILHDENIYRFECSCTPSRVFVQLMDTMNEKPEVFAVSIDPNFSFYLYNDFLSVSPGKKEPHGIILQRNKRGYGDLDELTSMCLAMEGVKIINGLECKIACNSSKISYVLDTEDFFYRPKRQRRTSSGTTSSWSRHHRARQERFLRFLSVS 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5595g00022 1377 ProSiteProfiles PAH domain profile. 42 112 IPR003822 GO:0006355
Pral5595g00022 1377 SUPERFAMILY PAH2 domain 38 111 IPR036600 GO:0006355
Pral5595g00022 1377 SUPERFAMILY PAH2 domain 123 195 IPR036600 GO:0006355
Pral5595g00022 1377 Pfam Sin3 family co-repressor 465 555 IPR013194 -
Pral5595g00022 1377 SMART hdac_interact2seq4b 461 561 IPR013194 -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 968 984 - -
Pral5595g00022 1377 Pfam C-terminal domain of Sin3a protein 1094 1342 IPR031693 -
Pral5595g00022 1377 Gene3D Paired amphipathic helix 48 110 IPR036600 GO:0006355
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 760 787 - -
Pral5595g00022 1377 FunFam Paired amphipathic helix protein Sin3 48 110 - -
Pral5595g00022 1377 Pfam Paired amphipathic helix repeat 149 193 IPR003822 GO:0006355
Pral5595g00022 1377 Pfam Paired amphipathic helix repeat 350 394 IPR003822 GO:0006355
Pral5595g00022 1377 Pfam Paired amphipathic helix repeat 65 109 IPR003822 GO:0006355
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 760 777 - -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 991 1005 - -
Pral5595g00022 1377 FunFam Paired amphipathic helix SIN3-like protein 125 196 - -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 1 42 - -
Pral5595g00022 1377 PANTHER SIN3B-RELATED 42 1238 IPR039774 GO:0003714
Pral5595g00022 1377 SUPERFAMILY PAH2 domain 331 397 IPR036600 GO:0006355
Pral5595g00022 1377 Gene3D Paired amphipathic helix 326 399 IPR036600 GO:0006355
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 424 445 - -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 196 305 - -
Pral5595g00022 1377 ProSiteProfiles PAH domain profile. 126 196 IPR003822 GO:0006355
Pral5595g00022 1377 Gene3D Paired amphipathic helix 125 197 IPR036600 GO:0006355
Pral5595g00022 1377 ProSiteProfiles PAH domain profile. 328 397 IPR003822 GO:0006355
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 229 305 - -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 927 1046 - -
Pral5595g00022 1377 MobiDBLite consensus disorder prediction 11 42 - -
Pral5595g00022 1377 FunFam Paired amphipathic helix protein SIN3 325 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5595g00022 Pral-Chr5595 111530 127912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5595g00022 31 145 WRKY Transcription Factor Family AT4G12020 50.862 1.48e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5595g00022 Sin3a_C 1.4e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5595g00022 K11644 - gmx:100807181 2037.69