Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5595g00015 ATGGCAAGAGACACAAACCTGGACGGGGAAATTGCGACATCTGATGCAACAGGATCAGCAAGTCATCCCCCAAACGAAGGACATGAAATAACCCAAACAAACACAGATGGGCAGCAACAAGATTCAAAGAAGAGCAATGCCAAAAAAGAAAGCCATAAAACAGTTCCCTTCTACAAGCTTTTCTCATATGCAGATGCTTTTGATCGTCTTCTCATGTTTGTTGGGACAACAGCGGCTGTTGCTAATGGAATGACTGTCCCTCTATTGATGATCATTTTTGGAAATGTCTTTGATGCATTTGGAGAAGCTAGTGACGCCAAAGAAATGGGTCATAATGTCTCCAAGGCGTCTCTTGACTTTGTATACTTGGCTATGGGTACTTTTGTATCTTCATTTTTGCAGGTGACTTGCTGGATGGTCACTGGAGAGAGACAGTCTGCAAGGATAAGAAGCTTATACCTTGAAGCAATTTTGAGACAAGAAGTAAGCTTCTTTGATAGGGAAACCAGCACCGGAGAGGTTATTACAAGGATGTCAGGTGACACGGTTCTCATTCAAGATGCCATGGGAGAGAAAGTAGGAAAGTTCATACAGCATGTGACAGCATTTGTGGGAGGAGTGGTCATATCATTTTCCAAGGGTTGGCTTCTCACCCTTGTCCTGTTATCTTTTCTTCCACTTTACATCCTCTCTGGTGCCTTGATGAGCTTCGTCGCTGCAAAGATGGCATCTAAAGGATTAGCAGCCTATTCCACAGCAGCAAATGTGGTGGAACAGACAATCAGTTCCATTCGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATAACCCAGTATGATAAATCTTTAATAAAAGCTTACCGTGCTGGTGTGGTAGAGGGGGCTGCTTCTGGTTGCGGCTTTGGTGCAGCTCGTTTCTTTATGTTCTCCAGTCATGCTTTGGGCGCATGGTACGGAGGGAAGATGGTACTAGAGAAAGGATACACAGGAGGGCAAGTCATGAGTATCTTTTTTGCAATATCTACTTGCTCCCTGCTTCTAGGGCAGTCATCTCCCAATTTGGTTGCATTTGCTGCGGGACAAGCTGCAGCTGTTAAAATGCTTGAAACAATCAAGAGGAAACCAGGAATTGATGCTTATGACACTTCTGGTCAGAAGTTGGATGATCTTAATGGAGATATAGAACTAAAGGAGGTTTGCTTTAGCTATCCTACAAGACCAAATGAACTAATATTCAACGGATTTTCTCTATCAATACCAAGCGGCACTACTACTGCCTTGGTAGGGCAAAGTGGGAGCGGGAAATCAACTGTTATCAGTTTGATAGAAAGGTTTTATGATCCACAATCTGGTGAAGTTCTCATTGACAATATCAATCTCAGAGAGTTTAACTTGAAATGGATTAGAGGGAAAATAGGCCTTGTCAGCCAGGAACCAATTCTCTTCGCTTGTAGCATTAGAGAGAACATTGCTTATGGCCGAGATGGTGCAACCGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTACTAAATTTATTGATAAATTTCCTCAGGGACTAGACACAATGGTGGGAGATCATGGAACCCAGCTCTCTGGGGGTCAAAAGCAGAGAATTGCAATCGCAAGAGCAATCTTGAAAGACCCAAAAATTTTACTTCTTGATGAAGCCACCAGTGCCCTGGATGCCGAATCTGAGAGAGTAGTGCAGGAGGCATTGGACAGAATTATGATCAGCAGGACCACGGTGATCGTAGCCCACCGCTTAAGTACTATAAGGAACGCAGATATAATAGCTGTTATTCATCAAGGAAAGATAGTAGAAAAAGGGTCACATGCAGAGCTCACAGGGGATCCAGATGGAGCCTATAGCCAGCTCATTAGATTGCAAGAAACTAACAGAGATCAAGAACAAAATAATGCAAATTACAAGGATAAGTCTGAAAGCTTTCAGGACTCCGCACGACCTTCAAGTCAACGATTTTCTTTCGTTCGATCAACAAGCCAAGGATCATCTGGAAAAGGAAACAGCAGTCGTCACTCTTTCTCAAGTCTCGCTTCTACAGCAGCAGGAGATTCTGACGCATCACACAACCCTGCCAAAGTCTCACTTCTCCGCCTTGCTCGTTTTAACAAGCCTGAATTCCCAGTGTTACTCTTGGCTACTTTGGCCGCAACACTGAATGGAGCAGTATCCCCCCTTTTTGGGCTCCTGCTATCTGGCATGGTGCATACTTTCTTTGAGCCTGAAGATAAACTCCGTAAAGATTCAAAATTCTGGGCATATGTGTTCGTTGCACTTGCTGCGGCAGCCTTCTTTGTGAATTCCATAAGGTCCTACTATTTTGGTGTAGCCGGTTGCAAATTGATAAAAAGGATTCGTCTATTGTGTTTTGAGAAAATAGTTCACATGGAAATAGGTTGGTTTGACAAAACTGAGAATTCAAGTGGATCACTTGGAGCAAGACTTGCTACTGATGCTGCTGCTATTCGAGCTGTGGTTGGGGATGCACTAGGCTTGCTGATTCAAGATATATCTACTGCAATCTCTGCCCTAGTAATTGGCTTTGAGTCAAGCTGGGAGCTTTCGTTGATCATTCTTGCTATGCTACCTTTACTGGTGGTAGTAAATGCTCAGGTGCACATTAAATCCATGCGAGGATTCAGTGCAGATGCAAAGAAACAATATGAGGAAGCAAGTCAAGTTGCGAATGATGCAGTAGGGAGTATTAGAACAGTGGCTGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCATAAGAAATGTGAAGGACCAATAAAAGCAGGTATAAGGCAAGGATTAATCAGCGGAACTGGTTTAGGTGTATCGTTCCTTGTCTTGTATTCTGTCTATGGATGCAGCTTTTATGCGGGTGCTCGACTTGTTCAAGATGGAAAAATATCATTCTCCCAAGTTTTTCGAGTCTTCTTCGTTCTCACTATGGCCGCTGTAGCACTGTCTCAATCTGGTCTAATGGCCCCAAGTGCAAGCAAAGCAACCGATTCTGTTGCTTCTATATTTGATATTCTTGATCAGAAATCAAAAATAGACTCTACCGATGTCTCTGGATTGACATTGCAAGATTTGAAGGGAGAAGTTGAGTTTCGCCATGTTGCTTTCAAGTATCCCACCAGGCCTGATGTTCAAATATTTAGAGATCTCTGCTTGACCATTCATTCAGGAAAGACTGTTGCACTAGTGGGAGAAAGTGGAAGTGGAAAGTCGACTGTGATCTCGTTGCTACAAAGATTCTATGATCCAAACTCAGGTCACATTACATTAGATGGAATCGAAATTCAAAAGCTACAGATCAAATGGTTAAGGCAACAAATGGGCTTAGTAAGCCAGGAGCCTATGTTGTTTAATGACACCATTCGAACTAATATTGCATACGGAAAGGAAGGAGACGCAACAGAAGCAGAAATTATAGCTGCTGCAGAACTGGCAAATGCTCACAAGTTCATTAGCAGCTTGTATCAGGGGTATGACACAATTGTGGGAGAGCGAGGATTTCAATTATCTGGGGGACAAAAGCAACGAGTGGCAATTGCAAGAGCCATAGTGAAGAATCCTAAGATATTACTACTAGATGAAGCCACCAGTGCTCTTGATGCTGAATCTGAAAAAGTGGTTCAAGATGCGTTGGATCGTGTGATAGTGGATAGAACCACAATTGTTGTGGCTCATAGGTTATCCACAGTGAAGAATGCAGATTTAATTGCAGTGGTTCAAAATGGAGTCATTGCAGAGAGGGGAAACCATAAAACTTTGCTCAAAAAAGGCGGAGCCTATGCTTCCTTACTAGCACTGCACAAAAGTACTTGA 3858 0.4311 MARDTNLDGEIATSDATGSASHPPNEGHEITQTNTDGQQQDSKKSNAKKESHKTVPFYKLFSYADAFDRLLMFVGTTAAVANGMTVPLLMIIFGNVFDAFGEASDAKEMGHNVSKASLDFVYLAMGTFVSSFLQVTCWMVTGERQSARIRSLYLEAILRQEVSFFDRETSTGEVITRMSGDTVLIQDAMGEKVGKFIQHVTAFVGGVVISFSKGWLLTLVLLSFLPLYILSGALMSFVAAKMASKGLAAYSTAANVVEQTISSIRTVASFTGEKQAITQYDKSLIKAYRAGVVEGAASGCGFGAARFFMFSSHALGAWYGGKMVLEKGYTGGQVMSIFFAISTCSLLLGQSSPNLVAFAAGQAAAVKMLETIKRKPGIDAYDTSGQKLDDLNGDIELKEVCFSYPTRPNELIFNGFSLSIPSGTTTALVGQSGSGKSTVISLIERFYDPQSGEVLIDNINLREFNLKWIRGKIGLVSQEPILFACSIRENIAYGRDGATDEEIRAAAELANATKFIDKFPQGLDTMVGDHGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQEALDRIMISRTTVIVAHRLSTIRNADIIAVIHQGKIVEKGSHAELTGDPDGAYSQLIRLQETNRDQEQNNANYKDKSESFQDSARPSSQRFSFVRSTSQGSSGKGNSSRHSFSSLASTAAGDSDASHNPAKVSLLRLARFNKPEFPVLLLATLAATLNGAVSPLFGLLLSGMVHTFFEPEDKLRKDSKFWAYVFVALAAAAFFVNSIRSYYFGVAGCKLIKRIRLLCFEKIVHMEIGWFDKTENSSGSLGARLATDAAAIRAVVGDALGLLIQDISTAISALVIGFESSWELSLIILAMLPLLVVVNAQVHIKSMRGFSADAKKQYEEASQVANDAVGSIRTVAAFCAEEKVMELYHKKCEGPIKAGIRQGLISGTGLGVSFLVLYSVYGCSFYAGARLVQDGKISFSQVFRVFFVLTMAAVALSQSGLMAPSASKATDSVASIFDILDQKSKIDSTDVSGLTLQDLKGEVEFRHVAFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLQRFYDPNSGHITLDGIEIQKLQIKWLRQQMGLVSQEPMLFNDTIRTNIAYGKEGDATEAEIIAAAELANAHKFISSLYQGYDTIVGERGFQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVIVDRTTIVVAHRLSTVKNADLIAVVQNGVIAERGNHKTLLKKGGAYASLLALHKST 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5595g00015 1285 SUPERFAMILY ABC transporter transmembrane region 53 379 IPR036640 GO:0005524|GO:0016020
Pral5595g00015 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1035 1280 IPR027417 -
Pral5595g00015 1285 FunFam ABC transporter B family member 1 385 634 - -
Pral5595g00015 1285 CDD ABC_MTABC3_MDL1_MDL2 1044 1278 - -
Pral5595g00015 1285 MobiDBLite consensus disorder prediction 10 41 - -
Pral5595g00015 1285 Gene3D ABC transporter type 1, transmembrane domain 678 1032 IPR036640 GO:0005524|GO:0016020
Pral5595g00015 1285 PANTHER ABC TRANSPORTER B FAMILY 36 635 IPR039421 -
Pral5595g00015 1285 SMART AAA_5 422 594 IPR003593 GO:0016887
Pral5595g00015 1285 SMART AAA_5 1071 1273 IPR003593 GO:0016887
Pral5595g00015 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1281 IPR003439 GO:0005524
Pral5595g00015 1285 Pfam ABC transporter 1064 1212 IPR003439 GO:0005524
Pral5595g00015 1285 FunFam ABC transporter B family member 9 59 392 - -
Pral5595g00015 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 395 631 IPR003439 GO:0005524
Pral5595g00015 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 356 - -
Pral5595g00015 1285 FunFam ABC transporter B family member 1 701 1010 - -
Pral5595g00015 1285 FunFam ABC transporter B family member 1 1034 1283 - -
Pral5595g00015 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5595g00015 1285 Coils Coil 629 649 - -
Pral5595g00015 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 711 1027 - -
Pral5595g00015 1285 Gene3D - 1034 1285 IPR027417 -
Pral5595g00015 1285 Pfam ABC transporter 414 562 IPR003439 GO:0005524
Pral5595g00015 1285 Pfam ABC transporter transmembrane region 721 994 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5595g00015 1285 Pfam ABC transporter transmembrane region 72 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral5595g00015 1285 Gene3D ABC transporter type 1, transmembrane domain 74 417 IPR036640 GO:0005524|GO:0016020
Pral5595g00015 1285 CDD ABC_MTABC3_MDL1_MDL2 395 633 - -
Pral5595g00015 1285 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524|GO:0016887
Pral5595g00015 1285 SUPERFAMILY ABC transporter transmembrane region 709 1024 IPR036640 GO:0005524|GO:0016020
Pral5595g00015 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 633 IPR027417 -
Pral5595g00015 1285 MobiDBLite consensus disorder prediction 1 50 - -
Pral5595g00015 1285 ProSitePatterns ABC transporters family signature. 1184 1198 IPR017871 GO:0005524|GO:0016887
Pral5595g00015 1285 Gene3D - 418 642 IPR027417 -
Pral5595g00015 1285 MobiDBLite consensus disorder prediction 636 686 - -
Pral5595g00015 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5595g00015 Pral-Chr5595 77752 85895 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5595g00015 105 639 Calmodulin-binding Proteins AT2G36910 39.591 1.68e-111 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5595g00015 K05658 - gmx:100777713 1743.78