Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00062 ATGCCGAGAAACATTTATGATTGGTTTTTCAACCACACCCATTTAAAGATGGCTTGGATTCCGCATCAAATCCAGAAAAAGGATGGTTATTCGAACTACCCGCCACCGGTTTTGCCTTCATATCCATCCCCATTCCCAGGTTCTCTCCGCAACGAATCAATGTCGTCGTCTTCACCTCCGTCTGGTGGCAGTAGTAGAAATAGTCCGGCTGTTCTTTTCATTATTGTGATTCTAGCCCTGCTGTTTTTCGTATCTGGTCTGCTTCATCTGCTTGTCAGATTTCTCGCGAAGCACCCATCAGCCGGTCCATCTGCTCAGTCTAATGGACACCAAGACATTTCTAACTCCGATACCTTGCAGAGGCAACTCCAGCAACTTTTCCATCTCCATGACTCAGGGCTGGATCAAGCTTACATCGACGCGCTTCCTGTTTTCCAGTATAGAGAAATTGTGGGTCTGAAAGAACCATTTGACTGTGCTGTTTGTCTCTCTGAATTCTCTGAAAATGATAAGCTCAGGCTGCTTCCTACCTGCAGCCATGCATTTCACATTGATTGCATAGACACCTGGCTCCTATCCAACTCGACATGTCCTCTCTGTAGAGGAACCCTCTTCAGCCCAGGATTCTCTGTCGAAAACCCGATGTTTTATTTTGATGATCCGAGGGAAGAAGATGGGTGCCCTTGCAATGGAGCAAGTGGGGTAACTGCCAGACAGAAAACTGTGGAAGTTGAAGAAATTGTAGAGAAAGCTGTTCTCCCTGTAAGACTTGGTAAATTCAGAAGGCTTGATATGGATGCAGGGGATAATGCAGGAGGGGAGACTAGTAGCAGTAATTTGGATGCAAGAAGATGTTTCTCAATGGGGTCTTACCAGTATGTGCTTGGCCACTCAGACCTGCGAATTACCCTGAACGATGACAGAAAGCTCTCGCATGGAACAGAAGAGACTGATAAGCTTTCAATGGAGGGTGATAAAGAAGCTAAAAAGATTACGAGCGTGGGTAAGGGGGAGAGCTATTCTGTTTCAAAAATCTGGCTGTGGTCCAACAAGGGAAAATTCTCAAGCTCTTCGAGTGATCAAATGGGCATGCCATCTCCTCTCAACACAGATTTACCATGGATGAGAACAACGGAAGGCACCTAA 1146 0.4599 MPRNIYDWFFNHTHLKMAWIPHQIQKKDGYSNYPPPVLPSYPSPFPGSLRNESMSSSSPPSGGSSRNSPAVLFIIVILALLFFVSGLLHLLVRFLAKHPSAGPSAQSNGHQDISNSDTLQRQLQQLFHLHDSGLDQAYIDALPVFQYREIVGLKEPFDCAVCLSEFSENDKLRLLPTCSHAFHIDCIDTWLLSNSTCPLCRGTLFSPGFSVENPMFYFDDPREEDGCPCNGASGVTARQKTVEVEEIVEKAVLPVRLGKFRRLDMDAGDNAGGETSSSNLDARRCFSMGSYQYVLGHSDLRITLNDDRKLSHGTEETDKLSMEGDKEAKKITSVGKGESYSVSKIWLWSNKGKFSSSSSDQMGMPSPLNTDLPWMRTTEGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00062 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Pral5593g00062 381 MobiDBLite consensus disorder prediction 313 332 - -
Pral5593g00062 381 SUPERFAMILY RING/U-box 138 207 - -
Pral5593g00062 381 Pfam Ring finger domain 158 201 IPR001841 -
Pral5593g00062 381 MobiDBLite consensus disorder prediction 353 381 - -
Pral5593g00062 381 FunFam RING-H2 finger protein ATL46 121 206 - -
Pral5593g00062 381 SMART ring_2 159 200 IPR001841 -
Pral5593g00062 381 CDD RING-H2_EL5-like 158 201 - -
Pral5593g00062 381 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Pral5593g00062 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 64 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00062 Pral-Chr5593 329512 331392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00062 86 359 C3H Transcription Factor Family AT2G18650 41.987 1.69e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00062 - - qsa:O6P43_004596 517.309