Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00056 ATGTGGGAACATATCAGAAGCCACATTAAGTGGAAGGAAAGAGGACGATCACTCTGGCTCTCAGCAATCTGTTGTTATAGATCTTGCTGGCATGATAAAATGACAGGCTCCATCTTTACATGTGAAGTTCTAGATGGTGGTGATTCTGGACCTCTATTTAGGGTCAGAAGGTGTTCCTGTTCTGATTTTTCTATTCCAGTTGGGTCAACCGTCCTCTCATTGTCTAACCTTTGTCAATTTGTGAGTCAAACCAATGAAGATGAGGGAAAGATGAATGCTGATATGGAATGTGATGGCGATGAAAGTATCCAGATGATCCTAGATGACTCTTGCAATCCAACAGAAAATGATGTCTTGAGTTGTCTTGAAAGTCGCTTCAATGAAGTACATGATAGCCATACATTAGATGTATTGCAGTCTGCCACGGGTCCAGTTCAAGATGAAGCTCAATTGTCTGATGACTTGGGGTCAATTGGTGAGATTGTGGTGGAAGAGTGTTCGTCATCCTTGGCTTGGAAAGATATTTCCCAAAAATTAGTTAATGCTTGCAGTGCAATATGCAAGCAGAAAGGGGCTTTAAAGCTCTATTGTAAACATGCTGACAATGAAACATGCATACATAAATGGGACATGAGGAATGGCAAAAATGAAACACAATCCACTTTATTTGCTAAATTTTGTGGGTCCCCTGTTCTTGGTATCCCGGCCATGGTTCATGTGGATGATGATCTTGAAAGTTTGCACGAGGTCTTAAGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAGTTTGTCCAAGAAGTACTCGAACTACTTCCTGGTGTTGAAGCATTCTCACGGTATGAATTTCTGAATAGTAGAAGTAATAGCTCTTCCATGCTAACAGTTGGAAATGGGTTTTTAGTGGCTGATTGGAGAGGCAGATCCCAATATCAGGAAGAAGCAATGCAAGGTCTATATAGGAGACACAAGAAAGTAAAATTGGCTGAAGAATGTGTTAAGGAAGATCATTGTCCACCTCCTGGAAAGCCACTCTACTCTAGGGTTCCTTTTGAACTTGTTGGTGATGTCTTTCAGGCTTGGGAGCTATTACGGAGATTTCACGAGATTTTGGGCCTGAAGGAACCGTTGTCATTGGATGAGCTGGAGAAAGAACTCATCAACCCATGGTTTAATGGATCAGTCGTTGGTGAAAAACCTGAGGGTGATGGTGGTGGACCAGCACTAACCCCAAACTGTGAAGCTGCTCCTGCAGTTTCTGCTGAAAGTCCCCATGCATTTATTCAAGTTGAAACTGAAGCCATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCGTTCACTTACACCAGATGCTTTGGTGCATCTTTGACAAAGGCTCATAATTCCTTGCTGGAGGTTTTAATAGGTGAACTGCAATCCAAAGTGGCTGCCCTGGTGGATCCAAATTTTGATCCTGGAGAGCTGAGGACAAGACGTGGAAGAAGGAAAGACATAGATAATACCATTCCTGCCAGACGAGCCAAGCTCAACATGCTTCCTATTAATGAACTAACTTGGCCTGAATTGGCTCGTAGATACATATTAGCTGTCTTATCAATGGATGGTAACCTTGACTCACCTGAGATTACTGCACGGGAAGGTGGTAAAGTATTTCGCTGCTTACAAGGTGATGGTGGTTTGCTGTGTGGCTCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCATTGTTGCTTGCGGAGTCTACAAAGAAAATTTTTGGTTCTGCGAGCAGTGAAAGTGATGTGCTTACCTTTGAAGATGAGGAGTTAGATGCAAAGGATGCTTGTGAGAAAACTTCGGTGAATGATGGTAATATTCCAGAATGGGCACAGCTGCTAGAACCTGTAAGAAAACTACCGACAAATGTGGGAACCAGAATCAGGAAGTGTGTCAATGATGCCTTACTGAAGGATCCACCAGAGTGGGCTAGGAAAATACTGCAACACTCAATTAGTAAGGAAGTGTACAAAGGCAATGCGTCTGGACCTACAAAGAAAGCAGTTCTTTCCGTGTTGGCTGATGTATGTGGTGAAGGATCACAACAGAAGCCCAATAAAGCAAGGAGAAAAAAGACTGTAATATCTATACCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCTGCTGCTGAAGATGATTCCAAGGTTTTTTGCAATTTGCTGGGACAAAAATTGATAAATTCTTCTGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCCATGGTGTCTCGTCCTCTTGACTTCAGGACCATTGACCTACGACTGGCTGCTGGGGCTTATGGGGGATCTCATGAAGCTTTTCTTGAGGATGTTCACGAGCTGTGGAACAATGTTCGTATTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCTGATAAATTATCTGAGAATTTTGAAATGTTGTATGATAGTGAGGTTTTGACTTATGTGCAAAGGTTCGGAGATTATGCCAAATTGGGAAACTTGAGTGCGGAAATGAGAAAAGAAGTGGAAAATTTTCTTGCATCGACTAGTGAAATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGACGATGACAGTGTTTTGCTATGTGATACCTGTGATGCTGAGTATCACACTTATTGCTTGAATCCTCCGCTAGCAAGGATACCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGACGGTAAACATGCAGTTCAAGATGTTTCACAGTGTTCAAAACTTATTGGCAAACCTCGAAGTAAAAAATTCAAGGGGGAGGTTACTTCACTTTACCTGGAGGCTTTAAGTCATCTACTATCTGTGATGGAAGAGAAAGAATACTGGGAGTACAGTGTTGGCGAGAGAACTATCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAACTCTTCCCTCATACGCCAGCACCTTGAGCAATGTGCCGAGTCTTCTGCTGAATCACATCAAAAGTTGCGTGCACTTTCTGCCGAGTGGAAAAGCCTGAAAATTAAAGAAGAAATATTATCTAGTAAAGCTGCAAAAATTGACACAAGCTCACTAGTGGCTAGTGGAGAAGTTGCCGTCAAGGAGGGGCTTCCTGGATCACTATCAAATCCTGGTAAATGCCTGGTTCAGCCACACAGCGCAAGTGACAGTCCTAACAATTTTGGGGTATTTGCTGATGGTTTGCGTTTGGAAGAGACAAATAGAGAGAGAAATGGGCTTAGCAGTGTTGATAAAAGCGCATCTACAACAAATTCAGAGACTGATAGTCAAAATAGGAATCCCATAAGTTTGGAGGGTCAGTTGAAGAATGTCTGTGCAGCTGTGGATGGCAGTCAGTTGCCTACAAATATGACTTCCTGTGGGGATTCTCAATATAGTGACAAGTCTAGTAATCCTTTTTCAGTGGCAAATAATATGCCTCAAGAAATTAACAGCTCTGGTGGAGCAGTTCATATCCAGAGTCACCAGGAGAAATGTGAGGGACGAGATTCATGTCTTGATCTGCAAGAACAAGGTGTCGCTGTGGATATTCCCAAGTCTGCTGTAAATGAATCAGAACCATATCACCTCGAGCTCAATGCTATCAGACATGATATCTCACTTCTGCAAGAGTCAATAACTAGTGTTGGATCACAGCTGCTAAAGCTATCTGTTCGTCGGGAATTTTTGGGAATTGATTCACTTGGTCGCTTTTACTGGGCTTCAGCAATGCCTAGTGGATGTCCGTGTATACTTGCTGATTCAACTGCTCTGATGTTGCATGGAGGAAGAATGGCCAATAGTAGAGACCCTTTGGACAAGATTTCTGCTATGAAGAATTTTGCACCATCTGGCAAGGATACCTATCAGATGTTAGGGCTGATGAAAGATTTATCTCCTTTAATGTCTCTACCAAGTAATACTTTAGGCTGTAATTCACCATGGGCTGCTTACCAAACTGATGCTGAAATTGAAGAGCTCTTGCGCTGGCTGAAGGATTATGACCCTAGAGAAAGAGAACTTAAAGATTCAATTATGATTTGGCATAAGTCAAGATTCCAAGAGCTTATTCATATGCAGAATGAAGATCAGGTTGAGCCCCAAGGACCTTTTCCTTTGCCAGGGGATAGAGAGAAAATAGTGTCTGATTCTCTTGTTACAAAGGCAACCTCCTTGTTAGAAAAGAGATATGGCCCATTCTTAGAGTTGGGTACCCTTGAGGCATTAAAGAAGCGGGGTAAAAAGGTAAGACCATCTCATGATGATAAGCTGTATAGGTGCCAATGCCTAGAACCCATATGGCCTTCTAGGCAACACTGCATGTCTTGTCACAAAACCCTTTTGAATGATGTTGAACTGGAAGGGCACAATGATGGCAAATGTAGTGCTGCTTTGCCTGCCTCTGAGAAGAATAAAGATATCAGCGGATCTTCTAAAGGGAGAGGTAATTTGAAATTTGAGACTGCACTTGAAAATGCCAGAGGTAATGCAGAAACAGGTGGAACCTCGATGAGTGGAGGATTTGAGCTAAGCTCAAGATTGATTAAATTTTCGAGTCAAGAATCAACATGTCCGTATAACTTTGAAGATGTCTGTTCCAAGTTTGTGACTGAAGATTCCAACAAGGAACTTATTAAAGAAATAGGTCTTATTGATTCAGATGGGATCCCATCCTTTGTTTCTTCTGTATCTCCTTATGCAAGTGATTCTACAGTTATGCTAATATCAAACAAAAAGGACGAATATGTAGGTGGGTCCAAGACTTCTGAAGGGCAGATTTCTATAGGAAGTGGCAATGATCATATATCAGGAATTCCTATTCAAAGTTCCAGTGTGTATGAGAACAATAAAACAGCAAAATCCAGCAGATCAACTTTGGGATCTTCAGGACAAAGGGACGGAAAATCTTTATTTTCTGTTCCTTCTTCACAAATGGGCACTGACAGCTGCTGTGTGGTCCCTCAATCTTCACTGAGACCATTGGTTGGAAAAGTTTCACATATTTTGAGGCTACTGAAGATTGGCCTACTTGATATGGATGCTGCACTCCCTGAAGTTGCTTTGAGGCCATCAAAAGCACAGTTGGAAAGAAGACAGGCTTGGCGTTCTTTTGTGAAATCTGCAAGGACTATATATGAGATGGTTCAAGCGACAATCACACTGGAGGACATGATTAAGACAGAGTACTTGAGAAATGACTGGTGGTACTGGTCATCACTGTCAGCCGCTGCCAAATCTTCTACTTTGTCATCCCTTGCCCTTCGAATATACACCCTTGATTCAGCCATCATATACGAGAAAATGTCAAGTTCAAGTTTTACTGATTGCTCGGAACCTCCTGTGGTAGCAGAACAGAAAGCATCAGCTGCTTTGGATGCGGAGAAATCCAGAGCAATACGGAAGTCAAGCAGGAAAAGGAAAGAACCAGATGGTTAA 5466 0.4241 MWEHIRSHIKWKERGRSLWLSAICCYRSCWHDKMTGSIFTCEVLDGGDSGPLFRVRRCSCSDFSIPVGSTVLSLSNLCQFVSQTNEDEGKMNADMECDGDESIQMILDDSCNPTENDVLSCLESRFNEVHDSHTLDVLQSATGPVQDEAQLSDDLGSIGEIVVEECSSSLAWKDISQKLVNACSAICKQKGALKLYCKHADNETCIHKWDMRNGKNETQSTLFAKFCGSPVLGIPAMVHVDDDLESLHEVLRKWLEQDRFGLDVEFVQEVLELLPGVEAFSRYEFLNSRSNSSSMLTVGNGFLVADWRGRSQYQEEAMQGLYRRHKKVKLAEECVKEDHCPPPGKPLYSRVPFELVGDVFQAWELLRRFHEILGLKEPLSLDELEKELINPWFNGSVVGEKPEGDGGGPALTPNCEAAPAVSAESPHAFIQVETEAMKEAAQVKLASFTYTRCFGASLTKAHNSLLEVLIGELQSKVAALVDPNFDPGELRTRRGRRKDIDNTIPARRAKLNMLPINELTWPELARRYILAVLSMDGNLDSPEITAREGGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAESTKKIFGSASSESDVLTFEDEELDAKDACEKTSVNDGNIPEWAQLLEPVRKLPTNVGTRIRKCVNDALLKDPPEWARKILQHSISKEVYKGNASGPTKKAVLSVLADVCGEGSQQKPNKARRKKTVISIPDIIMKQCRIVLRRAAAEDDSKVFCNLLGQKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNVRIAFGDQPDLVELADKLSENFEMLYDSEVLTYVQRFGDYAKLGNLSAEMRKEVENFLASTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHAVQDVSQCSKLIGKPRSKKFKGEVTSLYLEALSHLLSVMEEKEYWEYSVGERTILLKFLCDELLNSSLIRQHLEQCAESSAESHQKLRALSAEWKSLKIKEEILSSKAAKIDTSSLVASGEVAVKEGLPGSLSNPGKCLVQPHSASDSPNNFGVFADGLRLEETNRERNGLSSVDKSASTTNSETDSQNRNPISLEGQLKNVCAAVDGSQLPTNMTSCGDSQYSDKSSNPFSVANNMPQEINSSGGAVHIQSHQEKCEGRDSCLDLQEQGVAVDIPKSAVNESEPYHLELNAIRHDISLLQESITSVGSQLLKLSVRREFLGIDSLGRFYWASAMPSGCPCILADSTALMLHGGRMANSRDPLDKISAMKNFAPSGKDTYQMLGLMKDLSPLMSLPSNTLGCNSPWAAYQTDAEIEELLRWLKDYDPRERELKDSIMIWHKSRFQELIHMQNEDQVEPQGPFPLPGDREKIVSDSLVTKATSLLEKRYGPFLELGTLEALKKRGKKVRPSHDDKLYRCQCLEPIWPSRQHCMSCHKTLLNDVELEGHNDGKCSAALPASEKNKDISGSSKGRGNLKFETALENARGNAETGGTSMSGGFELSSRLIKFSSQESTCPYNFEDVCSKFVTEDSNKELIKEIGLIDSDGIPSFVSSVSPYASDSTVMLISNKKDEYVGGSKTSEGQISIGSGNDHISGIPIQSSSVYENNKTAKSSRSTLGSSGQRDGKSLFSVPSSQMGTDSCCVVPQSSLRPLVGKVSHILRLLKIGLLDMDAALPEVALRPSKAQLERRQAWRSFVKSARTIYEMVQATITLEDMIKTEYLRNDWWYWSSLSAAAKSSTLSSLALRIYTLDSAIIYEKMSSSSFTDCSEPPVVAEQKASAALDAEKSRAIRKSSRKRKEPDG 1821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00056 1821 CDD PHD1_Lid2p_like 869 914 - -
Pral5593g00056 1821 Pfam PHD-finger 869 915 IPR019787 -
Pral5593g00056 1821 Gene3D - 713 829 IPR036427 GO:0005515
Pral5593g00056 1821 SUPERFAMILY FYVE/PHD zinc finger 855 921 IPR011011 -
Pral5593g00056 1821 PANTHER OS02G0192300 PROTEIN 26 1817 - -
Pral5593g00056 1821 ProSitePatterns Zinc finger PHD-type signature. 870 914 IPR019786 -
Pral5593g00056 1821 SUPERFAMILY Bromodomain 704 823 IPR036427 GO:0005515
Pral5593g00056 1821 MobiDBLite consensus disorder prediction 1082 1112 - -
Pral5593g00056 1821 MobiDBLite consensus disorder prediction 1797 1821 - -
Pral5593g00056 1821 MobiDBLite consensus disorder prediction 1800 1821 - -
Pral5593g00056 1821 SMART PHD_3 869 915 IPR001965 -
Pral5593g00056 1821 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 949 993 IPR028942 -
Pral5593g00056 1821 ProSiteProfiles Zinc finger PHD-type profile. 867 917 IPR019787 -
Pral5593g00056 1821 MobiDBLite consensus disorder prediction 1090 1112 - -
Pral5593g00056 1821 MobiDBLite consensus disorder prediction 1623 1656 - -
Pral5593g00056 1821 Pfam Bromodomain 758 812 IPR001487 GO:0005515
Pral5593g00056 1821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 830 928 IPR013083 -
Pral5593g00056 1821 ProSiteProfiles Bromodomain profile. 760 808 IPR001487 GO:0005515
Pral5593g00056 1821 CDD Bromodomain 715 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00056 Pral-Chr5593 265599 277460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00056 26 1821 C2H2 Transcription Factor Family AT3G01460 47.239 0.0 1489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5593g00056 Bromodomain 3.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00056 K22768 - gmx:100791814 2348.16