Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00055 ATGGAACTCACCGATTCCGGCGACGAACTCAGGGACCACAAGCTGCCTCAAGATTCTCGCTCTGGACTCGGAATCGACCTCAATGAGATCCCCTCTCCTTCTTTTGCCGAAACCCTACCGGACTCCATCGACATCGTACGCGCGTACCACGAGAACCCGGCGCCTCCTCCCGGTGGACCGGCGGGGATTCCCGGCGACGCCCGCGGCTCCACTTGTGGTGCCTGTGGCAAGCCCGAGGCGCGGGGTCATGTTGTGGTCTGCGACGGGTGTGAGCGCGGCTACCATTTGGGCTGCGCGGGAATGCGTGGGCGCCAGGCCGTAAACCTTGACGAATGGGTTTGTGGAGAGTGCGTGTCCAGTGGGGTGAAGAGTAAGCGATGGCCATTGGGTGTCAAGTCCAAGCATCTTTTGGACATCAATGCTTCGCCACCCAGCGATGCTGACGGCGAGGGTAGTGAAGAATTGCAGGATTTGAGAAAGCACACTCAGGGTCATAATTCTTTCAGTGCCAACTCATTTGGTGCCCCGTTGGCATATTCAAACTTCTACAACGGTAATGCTATTAGCTTCCAAAAGGCATCTGGAGCTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATGTATTGAATCATACGCAATCAGTGACTAGAAATTTTGAGGAGGTTGATATGGGTTTGCCTCCTGGAAGGCATAGGAATAGTAAAAATACAGCTACTGGGAACCCAGGAGAGTTAATTTTGCAAGCTCTCAGAGATTTTATATCTGAAAGGCATGGTGTTCTGGAGGAAGGTTGGAAAGTGGATTTTAGACAACCCATTGGCAGCTCTGAGCTGTATGCTGTTTACTGTGCTCCAGATGGAAAGATTTTTGATTCTGTGTTTGAAGTAGCGTGTTATCTGGGGTTAATGCCTGGCTACAACTCTCTGGAATCTGAAATGAGAAATGATAGGCCTGTCTCTACATCAGGTGGGTCTCATTTAACCAGAAAAAGAAAGGCAGCTAGACTTCCAGTCGCTAATGGCTTTGCTGAAAGAAGGGAAAGTTTTACCAATAGTTGTTTTAAAGATCCTCCTTCGGATGCTGCAAGTGCAGAGTGCGCTAATGCATGTGGGAACATATCAGAAGCCACATTAAGTGGAAGGAAAGAGGACGATCACTCTGGCTCTCAGCAATCTGTTGATGGCCTTCCTTTACAGTTTGAAGATTTTTTTGTTCTTTCTTTGGGAAAGGTTGATGATAGACCTTCATATTGTGATGCTAACATTATTTGGCCCGTAGGTTATAGATCTTGCTGGCATGATAAAATGACAGGCTCCATCTTTACATGTGAAGTTCTAGATGGTGGTGATTCTGGACCTCTATTTAGGGTCAGAAGGTGTTCCTGTTCTGATTTTTCTATTCCAGTTGGGTCAACCGTCCTCTCATTGTCTAACCTTTGTCAATTTGTGAGTCAAACCAATGAAGATGAGGGAAAGATGAATGCTGATATGGAATGTGATGGCGATGAAAGTATCCAGATGATCCTAGATGACTCTTGCAATCCAACAGAAAATGATGTCTTGAGTTGTCTTGAAAGTCGCTTCAATGAAGTACATGATAGCCATACATTAGATGTATTGCAGTCTGCCACGGGTCCAGTTCAAGATGAAGCTCAATTGTCTGATGACTTGGGGTCAATTGGTGAGATTGTGGTGGAAGAGTGTTCGTCATCCTTGGCTTGGAAAGATATTTCCCAAAAATTAGTTAATGCTTGCAGTGCAATATGCAAGCAGAAAGGGGCTTTAAAGCTCTATTGTAAACATGCTGACAATGAAACATGCATACATAAATGGGACATGAGGAATGGCAAAAATGAAACACAATCCACTTTATTTGCTAAATTTTGTGGGTCCCCTGTTCTTGGTATCCCGGCCATGGTTCATGTGGATGATGATCTTGAAAGTTTGCACGAGGTCTTAAGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAGTTTGTCCAAGAAGTACTCGAACTACTTCCTGGTGTTGAAGCATTCTCACGGTATGAATTTCTGAATAGTAGAAGTAATAGCTCTTCCATGCTAACAGTTGGAAATGGGTTTTTAGTGGCTGATTGGAGAGGCAGATCCCAATATCAGGAAGAAGCAATGCAAGGTCTATATAGGAGACACAAGAAAGTAAAATTGGCTGAAGAATGTGTTAAGGAAGATCATTGTCCACCTCCTGGAAAGCCACTCTACTCTAGGGTTCCTTTTGAACTTGTTGGTGATGTCTTTCAGGCTTGGGAGCTATTACGGAGATTTCACGAGATTTTGGGCCTGAAGGAACCGTTGTCATTGGATGAGCTGGAGAAAGAACTCATCAACCCATGGTTTAATGGATCAGTCGTTGGTGAAAAACCTGAGGGTGATGGTGGTGGACCAGCACTAACCCCAAACTGTGAAGCTGCTCCTGCAGTTTCTGCTGAAAGTCCCCATGCATTTATTCAAGTTGAAACTGAAGCCATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCGTTCACTTACACCAGATGCTTTGGTGCATCTTTGACAAAGGCTCATAATTCCTTGCTGGAGGTTTTAATAGGTGAACTGCAATCCAAAGTGGCTGCCCTGGTGGATCCAAATTTTGATCCTGGAGAGCTGAGGACAAGACGTGGAAGAAGGAAAGACATAGATAATACCATTCCTGCCAGACGAGCCAAGCTCAACATGCTTCCTATTAATGAACTAACTTGGCCTGAATTGGCTCGTAGATACATATTAGCTGTCTTATCAATGGATGGTAACCTTGACTCACCTGAGATTACTGCACGGGAAGGTGGTAAAGTATTTCGCTGCTTACAAGGTGATGGTGGTTTGCTGTGTGGCTCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCATTGTTGCTTGCGGAGTCTACAAAGAAAATTTTTGGTTCTGCGAGCAGTGAAAGTGATGTGCTTACCTTTGAAGATGAGGAGTTAGATGCAAAGGATGCTTGTGAGAAAACTTCGGTGAATGATGGTAATATTCCAGAATGGGCACAGCTGCTAGAACCTGTAAGAAAACTACCGACAAATGTGGGAACCAGAATCAGGAAGTGTGTCAATGATGCCTTACTGAAGGATCCACCAGAGTGGGCTAGGAAAATACTGCAACACTCAATTAGTAAGGAAGTGTACAAAGGCAATGCGTCTGGACCTACAAAGAAAGCAGTTCTTTCCGTGTTGGCTGATGTATGTGGTGAAGGATCACAACAGAAGCCCAATAAAGCAAGGAGAAAAAAGACTGTAATATCTATACCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCTGCTGCTGAAGATGATTCCAAGGTTTTTTGCAATTTGCTGGGACAAAAATTGATAAATTCTTCTGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCCATGGTGTCTCGTCCTCTTGACTTCAGGACCATTGACCTACGACTGGCTGCTGGGGCTTATGGGGGATCTCATGAAGCTTTTCTTGAGGATGTTCACGAGCTGTGGAACAATGTTCGTATTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCTGATAAATTATCTGAGAATTTTGAAATGTTGTATGATAGTGAGGTTTTGACTTATGTGCAAAGGTTCGGAGATTATGCCAAATTGGGAAACTTGAGTGCGGAAATGAGAAAAGAAGTGGAAAATTTTCTTGCATCGACTAGTGAAATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGACGATGACAGTGTTTTGCTATGTGATACCTGTGATGCTGAGTATCACACTTATTGCTTGAATCCTCCGCTAGCAAGGATACCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGACGGTAAACATGCAGTTCAAGATGTTTCACAGTGTTCAAAACTTATTGGCAAACCTCGAAGTAAAAAATTCAAGGGGGAGGTTACTTCACTTTACCTGGAGGCTTTAAGTCATCTACTATCTGTGATGGAAGAGAAAGAATACTGGGAGTACAGTGTTGGCGAGAGAACTATCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAACTCTTCCCTCATACGCCAGCACCTTGAGCAATGTGCCGAGTCTTCTGCTGAATCACATCAAAAGTTGCGTGCACTTTCTGCCGAGTGGAAAAGCCTGAAAATTAAAGAAGAAATATTATCTAGTAAAGCTGCAAAAATTGACACAAGCTCACTAGTGGCTAGTGGAGAAGTTGCCGTCAAGGAGGGGCTTCCTGGATCACTATCAAATCCTGGTAAATGCCTGGTTCAGCCACACAGCGCAAGTGACAGTCCTAACAATTTTGGGGTATTTGCTGATGGTTTGCGTTTGGAAGAGACAAATAGAGAGAGAAATGGGCTTAGCAGTGTTGATAAAAGCGCATCTACAACAAATTCAGAGACTGATAGTCAAAATAGGAATCCCATAAGTTTGGAGGGTCAGTTGAAGAATGTCTGTGCAGCTGTGGATGGCAGTCAGTTGCCTACAAATATGACTTCCTGTGGGGATTCTCAATATAGTGACAAGTCTAGTAATCCTTTTTCAGTGGCAAATAATATGCCTCAAGAAATTAACAGCTCTGGTGGAGCAGTTCATATCCAGAGTCACCAGGAGAAATGTGAGGGACGAGATTCATGTCTTGATCTGCAAGAACAAGGTGTCGCTGTGGATATTCCCAAGTCTGCTGTAAATGAATCAGAACCATATCACCTCGAGCTCAATGCTATCAGACATGATATCTCACTTCTGCAAGAGTCAATAACTAGTGTTGGATCACAGCTGCTAAAGCTATCTGTTCGTCGGGAATTTTTGGGAATTGATTCACTTGGTCGCTTTTACTGGGCTTCAGCAATGCCTAGTGGATGTCCGTGTATACTTGCTGATTCAACTGCTCTGATGTTGCATGGAGGAAGAATGGCCAATAGTAGAGACCCTTTGGACAAGATTTCTGCTATGAAGAATTTTGCACCATCTGGCAAGGATACCTATCAGATGTTAGGGCTGATGAAAGATTTATCTCCTTTAATGTCTCTACCAAGTAATACTTTAGGCTGTAATTCACCATGGGCTGCTTACCAAACTGATGCTGAAATTGAAGAGCTCTTGCGCTGGCTGAAGGATTATGACCCTAGAGAAAGAGAACTTAAAGATTCAATTATGATTTGGCATAAGTCAAGATTCCAAGAGCTTATTCATATGCAGAATGAAGATCAGGTTGAGCCCCAAGGACCTTTTCCTTTGCCAGGGGATAGAGAGAAAATAGTGTCTGATTCTCTTGTTACAAAGGCAACCTCCTTGTTAGAAAAGAGATATGGCCCATTCTTAGAGTTGGGTACCCTTGAGGCATTAAAGAAGCGGGGTAAAAAGGTAAGACCATCTCATGATGATAAGCTGTATAGGTGCCAATGCCTAGAACCCATATGGCCTTCTAGGCAACACTGCATGTCTTGTCACAAAACCCTTTTGAATGATGTTGAACTGGAAGGGCACAATGATGGCAAATGTAGTGCTGCTTTGCCTGCCTCTGAGAAGAATAAAGATATCAGCGGATCTTCTAAAGGGAGAGGTAATTTGAAATTTGAGACTGCACTTGAAAATGCCAGAGGTAATGCAGAAACAGGTGGAACCTCGATGAGTGGAGGATTTGAGCTAAGCTCAAGATTGATTAAATTTTCGAGTCAAGAATCAACATGTCCGTATAACTTTGAAGATGTCTGTTCCAAGTTTGTGACTGAAGATTCCAACAAGGAACTTATTAAAGAAATAGGTCTTATTGATTCAGATGGGATCCCATCCTTTGTTTCTTCTGTATCTCCTTATGCAAGTGATTCTACAGTTATGCTAATATCAAACAAAAAGGACGAATATGTAGGTGGGTCCAAGACTTCTGAAGGGCAGATTTCTATAGGAAGTGGCAATGATCATATATCAGGAATTCCTATTCAAAGTTCCAGTGTGTATGAGAACAATAAAACAGCAAAATCCAGCAGATCAACTTTGGGATCTTCAGGACAAAGGGACGGAAAATCTTTATTTTCTGTTCCTTCTTCACAAATGGGCACTGACAGCTGCTGTGTGGTCCCTCAATCTTCACTGAGACCATTGGTTGGAAAAGTTTCACATATTTTGAGGCTACTGAAGATTGGCCTACTTGATATGGATGCTGCACTCCCTGAAGTTGCTTTGAGGCCATCAAAAGCACAGTTGGAAAGAAGACAGGCTTGGCGTTCTTTTGTGAAATCTGCAAGGACTATATATGAGATGGTTCAAGCGACAATCACACTGGAGGACATGATTAAGACAGAGTACTTGAGAAATGACTGGTGGTACTGGTCATCACTGTCAGCCGCTGCCAAATCTTCTACTTTGTCATCCCTTGCCCTTCGAATATACACCCTTGATTCAGCCATCATATACGAGAAAATGTCAAGTTCAAGTTTTACTGATTGCTCGGAACCTCCTGTGGTAGCAGAACAGAAAGCATCAGCTGCTTTGGATGCGGAGAAATCCAGAGCAATACGGAAGTCAAGCAGGAAAAGGAAAGAACCAGATGGTTAA 6672 0.4366 MELTDSGDELRDHKLPQDSRSGLGIDLNEIPSPSFAETLPDSIDIVRAYHENPAPPPGGPAGIPGDARGSTCGACGKPEARGHVVVCDGCERGYHLGCAGMRGRQAVNLDEWVCGECVSSGVKSKRWPLGVKSKHLLDINASPPSDADGEGSEELQDLRKHTQGHNSFSANSFGAPLAYSNFYNGNAISFQKASGAVTHAVRVGFEDVLNHTQSVTRNFEEVDMGLPPGRHRNSKNTATGNPGELILQALRDFISERHGVLEEGWKVDFRQPIGSSELYAVYCAPDGKIFDSVFEVACYLGLMPGYNSLESEMRNDRPVSTSGGSHLTRKRKAARLPVANGFAERRESFTNSCFKDPPSDAASAECANACGNISEATLSGRKEDDHSGSQQSVDGLPLQFEDFFVLSLGKVDDRPSYCDANIIWPVGYRSCWHDKMTGSIFTCEVLDGGDSGPLFRVRRCSCSDFSIPVGSTVLSLSNLCQFVSQTNEDEGKMNADMECDGDESIQMILDDSCNPTENDVLSCLESRFNEVHDSHTLDVLQSATGPVQDEAQLSDDLGSIGEIVVEECSSSLAWKDISQKLVNACSAICKQKGALKLYCKHADNETCIHKWDMRNGKNETQSTLFAKFCGSPVLGIPAMVHVDDDLESLHEVLRKWLEQDRFGLDVEFVQEVLELLPGVEAFSRYEFLNSRSNSSSMLTVGNGFLVADWRGRSQYQEEAMQGLYRRHKKVKLAEECVKEDHCPPPGKPLYSRVPFELVGDVFQAWELLRRFHEILGLKEPLSLDELEKELINPWFNGSVVGEKPEGDGGGPALTPNCEAAPAVSAESPHAFIQVETEAMKEAAQVKLASFTYTRCFGASLTKAHNSLLEVLIGELQSKVAALVDPNFDPGELRTRRGRRKDIDNTIPARRAKLNMLPINELTWPELARRYILAVLSMDGNLDSPEITAREGGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAESTKKIFGSASSESDVLTFEDEELDAKDACEKTSVNDGNIPEWAQLLEPVRKLPTNVGTRIRKCVNDALLKDPPEWARKILQHSISKEVYKGNASGPTKKAVLSVLADVCGEGSQQKPNKARRKKTVISIPDIIMKQCRIVLRRAAAEDDSKVFCNLLGQKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNVRIAFGDQPDLVELADKLSENFEMLYDSEVLTYVQRFGDYAKLGNLSAEMRKEVENFLASTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHAVQDVSQCSKLIGKPRSKKFKGEVTSLYLEALSHLLSVMEEKEYWEYSVGERTILLKFLCDELLNSSLIRQHLEQCAESSAESHQKLRALSAEWKSLKIKEEILSSKAAKIDTSSLVASGEVAVKEGLPGSLSNPGKCLVQPHSASDSPNNFGVFADGLRLEETNRERNGLSSVDKSASTTNSETDSQNRNPISLEGQLKNVCAAVDGSQLPTNMTSCGDSQYSDKSSNPFSVANNMPQEINSSGGAVHIQSHQEKCEGRDSCLDLQEQGVAVDIPKSAVNESEPYHLELNAIRHDISLLQESITSVGSQLLKLSVRREFLGIDSLGRFYWASAMPSGCPCILADSTALMLHGGRMANSRDPLDKISAMKNFAPSGKDTYQMLGLMKDLSPLMSLPSNTLGCNSPWAAYQTDAEIEELLRWLKDYDPRERELKDSIMIWHKSRFQELIHMQNEDQVEPQGPFPLPGDREKIVSDSLVTKATSLLEKRYGPFLELGTLEALKKRGKKVRPSHDDKLYRCQCLEPIWPSRQHCMSCHKTLLNDVELEGHNDGKCSAALPASEKNKDISGSSKGRGNLKFETALENARGNAETGGTSMSGGFELSSRLIKFSSQESTCPYNFEDVCSKFVTEDSNKELIKEIGLIDSDGIPSFVSSVSPYASDSTVMLISNKKDEYVGGSKTSEGQISIGSGNDHISGIPIQSSSVYENNKTAKSSRSTLGSSGQRDGKSLFSVPSSQMGTDSCCVVPQSSLRPLVGKVSHILRLLKIGLLDMDAALPEVALRPSKAQLERRQAWRSFVKSARTIYEMVQATITLEDMIKTEYLRNDWWYWSSLSAAAKSSTLSSLALRIYTLDSAIIYEKMSSSSFTDCSEPPVVAEQKASAALDAEKSRAIRKSSRKRKEPDG 2223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00055 2223 Gene3D - 1115 1231 IPR036427 GO:0005515
Pral5593g00055 2223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Pral5593g00055 2223 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1351 1395 IPR028942 -
Pral5593g00055 2223 Pfam Bromodomain 1160 1214 IPR001487 GO:0005515
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 1 34 - -
Pral5593g00055 2223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1232 1330 IPR013083 -
Pral5593g00055 2223 ProSitePatterns Zinc finger PHD-type signature. 1272 1316 IPR019786 -
Pral5593g00055 2223 Pfam Methyl-CpG binding domain 252 304 IPR001739 GO:0003677
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 2199 2223 - -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 1 19 - -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 2025 2058 - -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 1492 1514 - -
Pral5593g00055 2223 Pfam PHD-finger 1271 1317 IPR019787 -
Pral5593g00055 2223 Pfam PHD-finger 72 119 IPR019787 -
Pral5593g00055 2223 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 138 157 - -
Pral5593g00055 2223 CDD PHD1_Lid2p_like 1271 1316 - -
Pral5593g00055 2223 ProSiteProfiles FYR domain FYRN motif profile. 395 448 IPR003888 GO:0005634
Pral5593g00055 2223 CDD PHD_SF 71 117 - -
Pral5593g00055 2223 ProSiteProfiles Bromodomain profile. 1162 1210 IPR001487 GO:0005515
Pral5593g00055 2223 SUPERFAMILY FYVE/PHD zinc finger 1257 1323 IPR011011 -
Pral5593g00055 2223 CDD Bromodomain 1117 1224 - -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 1484 1514 - -
Pral5593g00055 2223 SUPERFAMILY Bromodomain 1106 1225 IPR036427 GO:0005515
Pral5593g00055 2223 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Pral5593g00055 2223 Gene3D - 396 505 - -
Pral5593g00055 2223 MobiDBLite consensus disorder prediction 2202 2223 - -
Pral5593g00055 2223 ProSiteProfiles Zinc finger PHD-type profile. 1269 1319 IPR019787 -
Pral5593g00055 2223 PANTHER OS02G0192300 PROTEIN 13 2219 - -
Pral5593g00055 2223 SMART PHD_3 71 118 IPR001965 -
Pral5593g00055 2223 SMART PHD_3 1271 1317 IPR001965 -
Pral5593g00055 2223 SUPERFAMILY FYVE/PHD zinc finger 69 129 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00055 Pral-Chr5593 265599 279563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00055 1 2223 C2H2 Transcription Factor Family AT3G01460 46.049 0.0 1806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5593g00055 Bromodomain 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00055 K22768 - gmx:100820223 2831.2