Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00054 ATGGAACTCACCGATTCCGGCGACGAACTCAGGGACCACAAGCTGCCTCAAGATTCTCGCTCTGGACTCGGAATCGACCTCAATGAGATCCCCTCTCCTTCTTTTGCCGAAACCCTACCGGACTCCATCGACATCGTACGCGCGTACCACGAGAACCCGGCGCCTCCTCCCGGTGGACCGGCGGGGATTCCCGGCGACGCCCGCGGCTCCACTTGTGGTGCCTGTGGCAAGCCCGAGGCGCGGGGTCATGTTGTGGTCTGCGACGGGTGTGAGCGCGGCTACCATTTGGGCTGCGCGGGAATGCGTGGGCGCCAGGCCGTAAACCTTGACGAATGGGTTTGTGGAGAGTGCGTGTCCAGTGGGGTGAAGAGTAAGCGATGGCCATTGGGTGTCAAGTCCAAGCATCTTTTGGACATCAATGCTTCGCCACCCAGCGATGCTGACGGCGAGGGTAGTGAAGAATTGCAGGATTTGAGTGCCAACTCATTTGGTGCCCCGTTGGCATATTCAAACTTCTACAACGGTAATGCTATTAGCTTCCAAAAGGCATCTGGAGCTGTGACACATGCTGTTAGAGTGGGTTTTGAGGATGTATTGAATCATACGCAATCAGTGACTAGAAATTTTGAGGAGGTTGATATGGGTTTGCCTCCTGGAAGGCATAGGAATAGTAAAAATACAGCTACTGGGAACCCAGGAGAGTTAATTTTGCAAGCTCTCAGAGATTTTATATCTGAAAGGCATGGTGTTCTGGAGGAAGGTTGGAAAGTGGATTTTAGACAACCCATTGGCAGCTCTGAGCTGTATGCTGTTTACTGTGCTCCAGATGGAAAGATTTTTGATTCTGTGTTTGAAGTAGCGTGTTATCTGGGGTTAATGCCTGGCTACAACTCTCTGGAATCTGAAATGAGAAATGATAGGCCTGTCTCTACATCAGGTGGGTCTCATTTAACCAGAAAAAGAAAGGCAGCTAGACTTCCAGTCGCTAATGGCTTTGCTGAAAGAAGGGAAAGTTTTACCAATAGTTGTTTTAAAGATCCTCCTTCGGATGCTGCAAGTGCAGAGTGCGCTAATGCATGTGGGAACATATCAGAAGCCACATTAAGTGGAAGGAAAGAGGACGATCACTCTGGCTCTCAGCAATCTGTTGATGGCCTTCCTTTACAGTTTGAAGATTTTTTTGTTCTTTCTTTGGGAAAGGTTGATGATAGACCTTCATATTGTGATGCTAACATTATTTGGCCCGTAGGTTATAGATCTTGCTGGCATGATAAAATGACAGGCTCCATCTTTACATGTGAAGTTCTAGATGGTGGTGATTCTGGACCTCTATTTAGGGTCAGAAGGTGTTCCTGTTCTGATTTTTCTATTCCAGTTGGGTCAACCGTCCTCTCATTGTCTAACCTTTGTCAATTTGTGAGTCAAACCAATGAAGATGAGGGAAAGATGAATGCTGATATGGAATGTGATGGCGATGAAAGTATCCAGATGATCCTAGATGACTCTTGCAATCCAACAGAAAATGATGTCTTGAGTTGTCTTGAAAGTCGCTTCAATGAAGTACATGATAGCCATACATTAGATGTATTGCAGTCTGCCACGGGTCCAGTTCAAGATGAAGCTCAATTGTCTGATGACTTGGGGTCAATTGGTGAGATTGTGGTGGAAGAGTGTTCGTCATCCTTGGCTTGGAAAGATATTTCCCAAAAATTAGTTAATGCTTGCAGTGCAATATGCAAGCAGAAAGGGGCTTTAAAGCTCTATTGTAAACATGCTGACAATGAAACATGCATACATAAATGGGACATGAGGAATGGCAAAAATGAAACACAATCCACTTTATTTGCTAAATTTTGTGGGTCCCCTGTTCTTGGTATCCCGGCCATGGTTCATGTGGATGATGATCTTGAAAGTTTGCACGAGGTCTTAAGAAAATGGTTGGAGCAGGATAGATTTGGGTTAGATGTTGAGTTTGTCCAAGAAGTACTCGAACTACTTCCTGGTGTTGAAGCATTCTCACGGTATGAATTTCTGAATAGTAGAAGTAATAGCTCTTCCATGCTAACAGTTGGAAATGGGTTTTTAGTGGCTGATTGGAGAGGCAGATCCCAATATCAGGAAGAAGCAATGCAAGGTCTATATAGGAGACACAAGAAAGTAAAATTGGCTGAAGAATGTGTTAAGGAAGATCATTGTCCACCTCCTGGAAAGCCACTCTACTCTAGGGTTCCTTTTGAACTTGTTGGTGATGTCTTTCAGGCTTGGGAGCTATTACGGAGATTTCACGAGATTTTGGGCCTGAAGGAACCGTTGTCATTGGATGAGCTGGAGAAAGAACTCATCAACCCATGGTTTAATGGATCAGTCGTTGGTGAAAAACCTGAGGGTGATGGTGGTGGACCAGCACTAACCCCAAACTGTGAAGCTGCTCCTGCAGTTTCTGCTGAAAGTCCCCATGCATTTATTCAAGTTGAAACTGAAGCCATGAAAGAGGCAGCTCAAGTTAAGCTTGCATCGTTCACTTACACCAGATGCTTTGGTGCATCTTTGACAAAGGCTCATAATTCCTTGCTGGAGGTTTTAATAGGTGAACTGCAATCCAAAGTGGCTGCCCTGGTGGATCCAAATTTTGATCCTGGAGAGCTGAGGACAAGACGTGGAAGAAGGAAAGACATAGATAATACCATTCCTGCCAGACGAGCCAAGCTCAACATGCTTCCTATTAATGAACTAACTTGGCCTGAATTGGCTCGTAGATACATATTAGCTGTCTTATCAATGGATGGTAACCTTGACTCACCTGAGATTACTGCACGGGAAGGTGGTAAAGTATTTCGCTGCTTACAAGGTGATGGTGGTTTGCTGTGTGGCTCCCTTACTGGTGTGGCTGGGATGGAAGCAGATGCATTGTTGCTTGCGGAGTCTACAAAGAAAATTTTTGGTTCTGCGAGCAGTGAAAGTGATGTGCTTACCTTTGAAGATGAGGAGTTAGATGCAAAGGATGCTTGTGAGAAAACTTCGGTGAATGATGGTAATATTCCAGAATGGGCACAGCTGCTAGAACCTGTAAGAAAACTACCGACAAATGTGGGAACCAGAATCAGGAAGTGTGTCAATGATGCCTTACTGAAGGATCCACCAGAGTGGGCTAGGAAAATACTGCAACACTCAATTAGTAAGGAAGTGTACAAAGGCAATGCGTCTGGACCTACAAAGAAAGCAGTTCTTTCCGTGTTGGCTGATGTATGTGGTGAAGGATCACAACAGAAGCCCAATAAAGCAAGGAGAAAAAAGACTGTAATATCTATACCTGACATTATCATGAAACAATGTCGCATTGTATTACGCCGTGCTGCTGCTGAAGATGATTCCAAGGTTTTTTGCAATTTGCTGGGACAAAAATTGATAAATTCTTCTGATAATGATGATGAAGGGCTTCTTGGATCTCCAGCCATGGTGTCTCGTCCTCTTGACTTCAGGACCATTGACCTACGACTGGCTGCTGGGGCTTATGGGGGATCTCATGAAGCTTTTCTTGAGGATGTTCACGAGCTGTGGAACAATGTTCGTATTGCTTTTGGGGATCAACCTGATTTAGTTGAGCTGGCTGATAAATTATCTGAGAATTTTGAAATGTTGTATGATAGTGAGGTTTTGACTTATGTGCAAAGGTTCGGAGATTATGCCAAATTGGGAAACTTGAGTGCGGAAATGAGAAAAGAAGTGGAAAATTTTCTTGCATCGACTAGTGAAATTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGACAGGGACGATGACAGTGTTTTGCTATGTGATACCTGTGATGCTGAGTATCACACTTATTGCTTGAATCCTCCGCTAGCAAGGATACCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGACGGTAAACATGCAGTTCAAGATGTTTCACAGTGTTCAAAACTTATTGGCAAACCTCGAAGTAAAAAATTCAAGGGGGAGGTTACTTCACTTTACCTGGAGGCTTTAAGTCATCTACTATCTGTGATGGAAGAGAAAGAATACTGGGAGTACAGTGTTGGCGAGAGAACTATCCTTCTCAAGTTTTTATGTGATGAGTTGCTCAACTCTTCCCTCATACGCCAGCACCTTGAGCAATGTGCCGAGTCTTCTGCTGAATCACATCAAAAGTTGCGTGCACTTTCTGCCGAGTGGAAAAGCCTGAAAATTAAAGAAGAAATATTATCTAGTAAAGCTGCAAAAATTGACACAAGCTCACTAGTGGCTAGTGGAGAAGTTGCCGTCAAGGAGGGGCTTCCTGGATCACTATCAAATCCTGGTAAATGCCTGGTTCAGCCACACAGCGCAAGTGACAGTCCTAACAATTTTGGGGTATTTGCTGATGGTTTGCGTTTGGAAGAGACAAATAGAGAGAGAAATGGGCTTAGCAGTGTTGATAAAAGCGCATCTACAACAAATTCAGAGACTGATAGTCAAAATAGGAATCCCATAAGTTTGGAGGGTCAGTTGAAGAATGTCTGTGCAGCTGTGGATGGCAGTCAGTTGCCTACAAATATGACTTCCTGTGGGGATTCTCAATATAGTGACAAGTCTAGTAATCCTTTTTCAGTGGCAAATAATATGCCTCAAGAAATTAACAGCTCTGGTGGAGCAGTTCATATCCAGAGTCACCAGGAGAAATGTGAGGGACGAGATTCATGTCTTGATCTGCAAGAACAAGGTGTCGCTGTGGATATTCCCAAGTCTGCTGTAAATGAATCAGAACCATATCACCTCGAGCTCAATGCTATCAGACATGATATCTCACTTCTGCAAGAGTCAATAACTAGTGTTGGATCACAGCTGCTAAAGCTATCTGTTCGTCGGGAATTTTTGGGAATTGATTCACTTGGTCGCTTTTACTGGGCTTCAGCAATGCCTAGTGGATGTCCGTGTATACTTGCTGATTCAACTGCTCTGATGTTGCATGGAGGAAGAATGGCCAATAGTAGAGACCCTTTGGACAAGATTTCTGCTATGAAGAATTTTGCACCATCTGGCAAGGATACCTATCAGATGTTAGGGCTGATGAAAGATTTATCTCCTTTAATGTCTCTACCAAGTAATACTTTAGGCTGTAATTCACCATGGGCTGCTTACCAAACTGATGCTGAAATTGAAGAGCTCTTGCGCTGGCTGAAGGATTATGACCCTAGAGAAAGAGAACTTAAAGATTCAATTATGATTTGGCATAAGTCAAGATTCCAAGAGCTTATTCATATGCAGAATGAAGATCAGGTTGAGCCCCAAGGACCTTTTCCTTTGCCAGGGGATAGAGAGAAAATAGTGTCTGATTCTCTTGTTACAAAGGCAACCTCCTTGTTAGAAAAGAGATATGGCCCATTCTTAGAGTTGGGTACCCTTGAGGCATTAAAGAAGCGGGGTAAAAAGGTAAGACCATCTCATGATGATAAGCTGTATAGGTGCCAATGCCTAGAACCCATATGGCCTTCTAGGCAACACTGCATGTCTTGTCACAAAACCCTTTTGAATGATGTTGAACTGGAAGGGCACAATGATGGCAAATGTAGTGCTGCTTTGCCTGCCTCTGAGAAGAATAAAGATATCAGCGGATCTTCTAAAGGGAGAGGTAATTTGAAATTTGAGACTGCACTTGAAAATGCCAGAGGTAATGCAGAAACAGGTGGAACCTCGATGAGTGGAGGATTTGAGCTAAGCTCAAGATTGATTAAATTTTCGAGTCAAGAATCAACATGTCCGTATAACTTTGAAGATGTCTGTTCCAAGTTTGTGACTGAAGATTCCAACAAGGAACTTATTAAAGAAATAGGTCTTATTGATTCAGATGGGATCCCATCCTTTGTTTCTTCTGTATCTCCTTATGCAAGTGATTCTACAGTTATGCTAATATCAAACAAAAAGGACGAATATGTAGGTGGGTCCAAGACTTCTGAAGGGCAGATTTCTATAGGAAGTGGCAATGATCATATATCAGGAATTCCTATTCAAAGTTCCAGTGTGTATGAGAACAATAAAACAGCAAAATCCAGCAGATCAACTTTGGGATCTTCAGGACAAAGGGACGGAAAATCTTTATTTTCTGTTCCTTCTTCACAAATGGGCACTGACAGCTGCTGTGTGGTCCCTCAATCTTCACTGAGACCATTGGTTGGAAAAGTTTCACATATTTTGAGGCTACTGAAGATTGGCCTACTTGATATGGATGCTGCACTCCCTGAAGTTGCTTTGAGGCCATCAAAAGCACAGTTGGAAAGAAGACAGGCTTGGCGTTCTTTTGTGAAATCTGCAAGGACTATATATGAGATGGTTCAAGCGACAATCACACTGGAGGACATGATTAAGACAGAGTACTTGAGAAATGACTGGTGGTACTGGTCATCACTGTCAGCCGCTGCCAAATCTTCTACTTTGTCATCCCTTGCCCTTCGAATATACACCCTTGATTCAGCCATCATATACGAGAAAATGTCAAGTTCAAGTTTTACTGATTGCTCGGAACCTCCTGTGGTAGCAGAACAGAAAGCATCAGCTGCTTTGGATGCGGAGAAATCCAGAGCAATACGGAAGTCAAGCAGGAAAAGGAAAGAACCAGATGGTTAA 6642 0.4368 MELTDSGDELRDHKLPQDSRSGLGIDLNEIPSPSFAETLPDSIDIVRAYHENPAPPPGGPAGIPGDARGSTCGACGKPEARGHVVVCDGCERGYHLGCAGMRGRQAVNLDEWVCGECVSSGVKSKRWPLGVKSKHLLDINASPPSDADGEGSEELQDLSANSFGAPLAYSNFYNGNAISFQKASGAVTHAVRVGFEDVLNHTQSVTRNFEEVDMGLPPGRHRNSKNTATGNPGELILQALRDFISERHGVLEEGWKVDFRQPIGSSELYAVYCAPDGKIFDSVFEVACYLGLMPGYNSLESEMRNDRPVSTSGGSHLTRKRKAARLPVANGFAERRESFTNSCFKDPPSDAASAECANACGNISEATLSGRKEDDHSGSQQSVDGLPLQFEDFFVLSLGKVDDRPSYCDANIIWPVGYRSCWHDKMTGSIFTCEVLDGGDSGPLFRVRRCSCSDFSIPVGSTVLSLSNLCQFVSQTNEDEGKMNADMECDGDESIQMILDDSCNPTENDVLSCLESRFNEVHDSHTLDVLQSATGPVQDEAQLSDDLGSIGEIVVEECSSSLAWKDISQKLVNACSAICKQKGALKLYCKHADNETCIHKWDMRNGKNETQSTLFAKFCGSPVLGIPAMVHVDDDLESLHEVLRKWLEQDRFGLDVEFVQEVLELLPGVEAFSRYEFLNSRSNSSSMLTVGNGFLVADWRGRSQYQEEAMQGLYRRHKKVKLAEECVKEDHCPPPGKPLYSRVPFELVGDVFQAWELLRRFHEILGLKEPLSLDELEKELINPWFNGSVVGEKPEGDGGGPALTPNCEAAPAVSAESPHAFIQVETEAMKEAAQVKLASFTYTRCFGASLTKAHNSLLEVLIGELQSKVAALVDPNFDPGELRTRRGRRKDIDNTIPARRAKLNMLPINELTWPELARRYILAVLSMDGNLDSPEITAREGGKVFRCLQGDGGLLCGSLTGVAGMEADALLLAESTKKIFGSASSESDVLTFEDEELDAKDACEKTSVNDGNIPEWAQLLEPVRKLPTNVGTRIRKCVNDALLKDPPEWARKILQHSISKEVYKGNASGPTKKAVLSVLADVCGEGSQQKPNKARRKKTVISIPDIIMKQCRIVLRRAAAEDDSKVFCNLLGQKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFLEDVHELWNNVRIAFGDQPDLVELADKLSENFEMLYDSEVLTYVQRFGDYAKLGNLSAEMRKEVENFLASTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHAVQDVSQCSKLIGKPRSKKFKGEVTSLYLEALSHLLSVMEEKEYWEYSVGERTILLKFLCDELLNSSLIRQHLEQCAESSAESHQKLRALSAEWKSLKIKEEILSSKAAKIDTSSLVASGEVAVKEGLPGSLSNPGKCLVQPHSASDSPNNFGVFADGLRLEETNRERNGLSSVDKSASTTNSETDSQNRNPISLEGQLKNVCAAVDGSQLPTNMTSCGDSQYSDKSSNPFSVANNMPQEINSSGGAVHIQSHQEKCEGRDSCLDLQEQGVAVDIPKSAVNESEPYHLELNAIRHDISLLQESITSVGSQLLKLSVRREFLGIDSLGRFYWASAMPSGCPCILADSTALMLHGGRMANSRDPLDKISAMKNFAPSGKDTYQMLGLMKDLSPLMSLPSNTLGCNSPWAAYQTDAEIEELLRWLKDYDPRERELKDSIMIWHKSRFQELIHMQNEDQVEPQGPFPLPGDREKIVSDSLVTKATSLLEKRYGPFLELGTLEALKKRGKKVRPSHDDKLYRCQCLEPIWPSRQHCMSCHKTLLNDVELEGHNDGKCSAALPASEKNKDISGSSKGRGNLKFETALENARGNAETGGTSMSGGFELSSRLIKFSSQESTCPYNFEDVCSKFVTEDSNKELIKEIGLIDSDGIPSFVSSVSPYASDSTVMLISNKKDEYVGGSKTSEGQISIGSGNDHISGIPIQSSSVYENNKTAKSSRSTLGSSGQRDGKSLFSVPSSQMGTDSCCVVPQSSLRPLVGKVSHILRLLKIGLLDMDAALPEVALRPSKAQLERRQAWRSFVKSARTIYEMVQATITLEDMIKTEYLRNDWWYWSSLSAAAKSSTLSSLALRIYTLDSAIIYEKMSSSSFTDCSEPPVVAEQKASAALDAEKSRAIRKSSRKRKEPDG 2213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00054 2213 Gene3D - 1105 1221 IPR036427 GO:0005515
Pral5593g00054 2213 ProSiteProfiles Zinc finger PHD-type profile. 1259 1309 IPR019787 -
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 1482 1504 - -
Pral5593g00054 2213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 137 IPR013083 -
Pral5593g00054 2213 ProSiteProfiles FYR domain FYRN motif profile. 385 438 IPR003888 GO:0005634
Pral5593g00054 2213 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1341 1385 IPR028942 -
Pral5593g00054 2213 ProSitePatterns Zinc finger PHD-type signature. 1262 1306 IPR019786 -
Pral5593g00054 2213 SUPERFAMILY FYVE/PHD zinc finger 1247 1313 IPR011011 -
Pral5593g00054 2213 ProSiteProfiles Bromodomain profile. 1152 1200 IPR001487 GO:0005515
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 1 34 - -
Pral5593g00054 2213 Pfam PHD-finger 72 119 IPR019787 -
Pral5593g00054 2213 Pfam PHD-finger 1261 1307 IPR019787 -
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 1 19 - -
Pral5593g00054 2213 CDD PHD1_Lid2p_like 1261 1306 - -
Pral5593g00054 2213 CDD Bromodomain 1107 1214 - -
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 1474 1504 - -
Pral5593g00054 2213 Pfam Bromodomain 1150 1204 IPR001487 GO:0005515
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 2192 2213 - -
Pral5593g00054 2213 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 2015 2048 - -
Pral5593g00054 2213 CDD PHD_SF 71 117 - -
Pral5593g00054 2213 PANTHER OS02G0192300 PROTEIN 13 2209 - -
Pral5593g00054 2213 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Pral5593g00054 2213 SUPERFAMILY Bromodomain 1096 1215 IPR036427 GO:0005515
Pral5593g00054 2213 Gene3D - 386 495 - -
Pral5593g00054 2213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1222 1320 IPR013083 -
Pral5593g00054 2213 Pfam Methyl-CpG binding domain 242 294 IPR001739 GO:0003677
Pral5593g00054 2213 MobiDBLite consensus disorder prediction 2189 2213 - -
Pral5593g00054 2213 SUPERFAMILY FYVE/PHD zinc finger 69 129 IPR011011 -
Pral5593g00054 2213 SMART PHD_3 71 118 IPR001965 -
Pral5593g00054 2213 SMART PHD_3 1261 1307 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00054 Pral-Chr5593 265599 279563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00054 1 2213 C2H2 Transcription Factor Family AT3G01460 45.874 0.0 1790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5593g00054 Bromodomain 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00054 K22768 - gmx:100820223 2811.17