Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00053 ATGGAGTCCGGCGATCTTTTCTTCGAGTCTTCCGCTCGCCGCGGGACCATGCTGTTCCTCCGAAATGGTGACATCAGATTTGGAGGAAGTTCGATGATGAGCGCGGATGAAACTTCAAAGAAACGGCCTTTCTTCAGCTCACCGGAGGAACTGCTCGACGAGGAATATTATGATGAGCAACTGCCAGAGAAGAAGCGTCGTCTCACCCCCGAGCAGGTTCATCTGTTGGAGAAAAGTTTTGAGGCAGAGAACAAGCTGGAGCCAGTAAGGAAGACCCAGTTGGCCAATAAGCTGGGATTGCAGCCAAGGCAGGTTGCCGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAAATTGAAAGGGATTTTGATACTCTCAAGTCTTCCTACGACTCACTCCTTTTAAAATATGAATTCACTGTGAAGGAGAATGAAAAGCTTAAATCCGAGGTGCTATCACTGAGTGAGAAGCTTCAAGGAAAGGATGAGCCTAGAGCACCGATACTTGATCAAAGGATTGACCCTCTTCCAGTGGATGCAACCCAATTTTCAGCCCCGCCATTCAGCAAGAGGGTGGAGGATCGTCTGAGCACGGGGAGTGGTGGAAGCTCAGTTGTGGACATCGATAGCTCACAGCTTGTTGTGGATAGTGTTGATTCATACTTTCAGGCTGCCAGTTATACTGAATACATCGGCTGTGTTAACGGGGTTCAGTCGGAGGATGATGATGGGAGTGACGATGGACGGAGCTACTTCTCCGATGTGCTTGTGGCCGCGGAATCACATGGGCAAAACCACGAGGTAGGGGAATGGGGTTGGTGGATGTGGTCTTAA 840 0.5012 MESGDLFFESSARRGTMLFLRNGDIRFGGSSMMSADETSKKRPFFSSPEELLDEEYYDEQLPEKKRRLTPEQVHLLEKSFEAENKLEPVRKTQLANKLGLQPRQVAVWFQNRRARWKTKQIERDFDTLKSSYDSLLLKYEFTVKENEKLKSEVLSLSEKLQGKDEPRAPILDQRIDPLPVDATQFSAPPFSKRVEDRLSTGSGGSSVVDIDSSQLVVDSVDSYFQAASYTEYIGCVNGVQSEDDDGSDDGRSYFSDVLVAAESHGQNHEVGEWGWWMWS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00053 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 218 IPR045224 GO:0003700
Pral5593g00053 279 CDD homeodomain 64 120 IPR001356 GO:0003677
Pral5593g00053 279 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Pral5593g00053 279 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Pral5593g00053 279 SUPERFAMILY Homeodomain-like 57 121 IPR009057 -
Pral5593g00053 279 SMART HOX_1 62 123 IPR001356 GO:0003677
Pral5593g00053 279 FunFam Homeobox-leucine zipper protein HAT5 57 121 - -
Pral5593g00053 279 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Pral5593g00053 279 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Pral5593g00053 279 Gene3D - 57 126 - -
Pral5593g00053 279 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Pral5593g00053 279 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00053 Pral-Chr5593 262657 265852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00053 1 278 Homeobox Transcription Factor Family AT3G01470 53.659 1.70e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5593g00053 Homeodomain 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00053 K09338 - jre:108992866 309.686