Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00027 ATGATGGCGTCTTCTTCAAGCTACAACTCTCCATGTGCAGCCTGCAAGTTTCTGAGAAGGAAGTGCATGCCAGACTGCATATTTGCGCCATATTTCCCACCAGAAGAGCCTCAAAAATTTGCCAACGTTCACAAGATATTCGGAGCAAGCAACGTTAGCAAGCTTCTGAACGAAGTTCTTCCTCATCAAAGGGAAGATGCGGTGAACTCTCTGGCTTATGAAGCTGAGGCTCGGATCAAAGATCCTGTGTATGGCTGTGTTGGAGCCATCTCGGTGCTCCAAAGGCAAGTCATTAGGCTCCAAAAGGAACTAGATGCCACAAATGCTGAAATGATTCGCTATACTTGCACTGAGATTCCCACTCATCATCTGGCTAATGAACCACCCGGAGCTTCGTCCTCGTCCCTTCTTGGTCAGTCTCCTTCTGCTTTTTACTATCCTTCTCCATGGAATAATGATCTTTGTGGGGATGCCTATCATCACATTCACAGAGGAGCAGATAATAGTGACATGTGA 516 0.4651 MMASSSSYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNAEMIRYTCTEIPTHHLANEPPGASSSSLLGQSPSAFYYPSPWNNDLCGDAYHHIHRGADNSDM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00027 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 124 - -
Pral5593g00027 171 Coils Coil 90 110 - -
Pral5593g00027 171 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pral5593g00027 171 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00027 Pral-Chr5593 152647 154570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00027 1 117 AS2 family AT5G63090 83.761 1.28e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5593g00027 LOB 4.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00027 - - gmx:100306630 268.085