Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00020 ATGGCTAGGAGCTGGCTTCTTGATGTCGGAGGGTTTGCCAAGAAAGTGAAAAGCAGTTCTCTGCCCTCAGCTGAGCAAATCAAAGACTGTGGGGCATATCGTGAATGTCCAAATTGTCATTGGCATATTGATAATAGTGATGTTTTCCCTGAGTGGCCCGGCTTTCCCGCTGGGGTAAAATTTGATCCTTCTGATATAGAGCTCTTAGAACATTTAGCTGCAAAATGTGGCATCGGAAATGCAGAGCCCCACATGTTTATCAATGAGTTCATTTCAACGCTGGAGGGTGATGACGGTATTTGCTACACTCATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGGAGTAGTGTCCATTTCTTTCATAGAACAATTAATGCCTATGCATGTGGTCAACGAAAGCGTCGAAAGATTCATCATCATCATGGTGCAACTGAGGACCATGTGCGGTGGCACAAGACTGGGAAGACCAAATCTGTGATGGGAGACGGCATACACAAAGGTTTTAAAAAGATCATGGTTCTTTATGTAAGACCTGAGAAAGGTTCAAAGCCGTATAAATCCAATTGGGTGATGCATCAATACCATCTGGGGACTGAAGAAGAGGAGAAGGAAGGTGAATATGTGGTCTCAAAGGTTTTTTATCAAAAGAAGCAGCTGGAGAAAAATGAGGAGAATCCATTGGTTGAAGAGTCAGATAATATGACATCACGAACAAGTCCAAGAACCCCAAACCCAAACCCCCGCAACCCACCTCGACCAGGAAATTCTGCTGACTGTGATGATAATTTTGATGAGAAAGTACATCTCTCATTCAACAGGGATGCTGAGTCTATCCCTGGAGAGCCAAGTGCCTTACCAACTGATGTCCGGGATGAGGATGATGCGAGTGGCCCCGCATGGTTGGCTGGTGAATCACAGGCTATTGAAACCTCTGACTTTGATGGTTTGGATGACATATTATTATGCAAGGAGATCTTAGGTTCCACTCAATTAAATGATTCGGGAATGAATCCCACCACAGTCAATGGCTTTGCCGGCGACACAAACTTGTCAGCCGGAAATGACAATGCATCCTTTGGAATCTCTGACCTGGATAACCTGGAATTGGGTACTCCCCCAGATTTCCAACTTTCTAACTTGCAATTTTGTTCTCAAGACAGTATACTTGACTGGATAGACAGAATATGA 1191 0.4408 MARSWLLDVGGFAKKVKSSSLPSAEQIKDCGAYRECPNCHWHIDNSDVFPEWPGFPAGVKFDPSDIELLEHLAAKCGIGNAEPHMFINEFISTLEGDDGICYTHPENLPGAKKDGSSVHFFHRTINAYACGQRKRRKIHHHHGATEDHVRWHKTGKTKSVMGDGIHKGFKKIMVLYVRPEKGSKPYKSNWVMHQYHLGTEEEEKEGEYVVSKVFYQKKQLEKNEENPLVEESDNMTSRTSPRTPNPNPRNPPRPGNSADCDDNFDEKVHLSFNRDAESIPGEPSALPTDVRDEDDASGPAWLAGESQAIETSDFDGLDDILLCKEILGSTQLNDSGMNPTTVNGFAGDTNLSAGNDNASFGISDLDNLELGTPPDFQLSNLQFCSQDSILDWIDRI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00020 396 Gene3D NAC domain 64 221 IPR036093 GO:0003677|GO:0006355
Pral5593g00020 396 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 310 IPR044799 GO:0003700
Pral5593g00020 396 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Pral5593g00020 396 FunFam NAC domain-containing protein 8 64 220 - -
Pral5593g00020 396 MobiDBLite consensus disorder prediction 224 299 - -
Pral5593g00020 396 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Pral5593g00020 396 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Pral5593g00020 396 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00020 Pral-Chr5593 86491 90663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00020 33 218 NAC Transcription Factor Family AT4G28500 54.255 8.80e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5593g00020 NAM 7.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00020 - - gmx:100780442 565.074