Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5593g00003 ATGGTACAGAGAGTTCAGAGGAAGATCATGAGGCTGGATAAAAGCAAAGAGAAGGCCTCATTTGGGCGGAGATCAACACGCACACTTCGTCATAAACAATGGTCATCAATTTTCCAGTTTAAAACTGGTGATACCTTCAATGTTATAGCTCAGCTTTTTGTGACTTTGACAGCTACGTCTTCTGTCCTACTCCAGCATAGTGGAAAAAATACGAATCAAAAACCAGAAATTACGATAATATGGACCCCACTTTGTCCTATTAATCACGCCATTACTCTCGGCTTTTCTTCCTTCAAAACCCCACTCCTCCACCTGAAATCCCCCGCCACTTCCACACTTTGTTCATCAGAAACGCTCAAAGCGAAGATGCCTCCTCTCGCAGCTTGCTTTCTTCTTCTTTTCTGTCTCCCTCTCATTGTTTCCTGCGTCGCAGTTCTAGACCCTGAGCTAGTTGTACAAGACGTGCACAGAAGAATCAATGCCTCTAGAAGAAATTTGGGGTATTTATCATGTGGCACCGGCAACCCCATCGACGACTGCTGGAGGTGCGACCCGAACTGGGAGGGGAACCGGCAGAGGCTAGCCGACTGCGCCATCGGGTTCGGCAAGGACGCCATGGGAGGAAGAAACGGTCGAGTCTATGTGGTGACAGACTCCGGAGACGACGACCCGGTGAACCCTAAGCCAGGAACTCTGAGACATGCCGTCATACAAGACGAGCCGTTATGGATTATCTTCAAGAGAGACATGGTGATAACCCTAAAGCAAGAGCTGGTGATGAACTCGTTCAAGACCATTGACGGAAGGGGAGCGAGTGTTCACATTGCAGGCGGCGGATGCATAACGATACATTACGTTAGCAACATTATCATTCACGGCATTCACGTTCATGATTGTAAGCCCACCGGGCACGCCGATATCAGAGACTCTCCTCGCCACTATGGGTGGTGGACGGTGTCCGACGGGGACGGAATCTCCATATTTAATTCCAGGCATATCTGGGTGGACCACTGCTCGCTCTCTAATTGCCGCGACGGGCTCATTGACGCAATCCATGGATCCACAGCCATCACTATCTCCAACAACTACATGACCCACCATGATAAAGTCATGCTCTTAGGCCACAGTGATTCTTACACTCAGGACAAGGACATGCAGGTCACTATCGCCTTCAATCACTTCGGAGAAGGCCTCGTGCAGAGAATGCCAAGGTGTAGGCACGGGTATTTTCATGTGGTGAACAATGATTATACACACTGGGAAATGTATGCGATAGGTGGGAGTGCGAATCCTACCATAAACAGCCAGGGGAATAGGTTTCTGGCACCAGATAACAGGTTTAGTAAGGAGGTGACGAAGCACGAGGATGCCGCAGAAGGAGAGTGGATGAACTGGAACTGGAGATCAGAAGGTGACTTGTTCTTGAACGGAGCTTATTTCAGGCAATCTGGTGCCGGCGCTTCTTCAAGCTACGCTAGGGCTTCAAGTCTCAGCGCCAGACCTTCTTCTCTTGTTGGCTCCATGACCATGACTGCTGGTGTACTCACATGCAGGAAGGGCATGAGTTGCTGA 1572 0.4955 MVQRVQRKIMRLDKSKEKASFGRRSTRTLRHKQWSSIFQFKTGDTFNVIAQLFVTLTATSSVLLQHSGKNTNQKPEITIIWTPLCPINHAITLGFSSFKTPLLHLKSPATSTLCSSETLKAKMPPLAACFLLLFCLPLIVSCVAVLDPELVVQDVHRRINASRRNLGYLSCGTGNPIDDCWRCDPNWEGNRQRLADCAIGFGKDAMGGRNGRVYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVITLKQELVMNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHVHDCKPTGHADIRDSPRHYGWWTVSDGDGISIFNSRHIWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDAAEGEWMNWNWRSEGDLFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTMTAGVLTCRKGMSC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 321 342 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 197 214 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 465 489 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 401 420 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 221 246 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 494 517 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 257 273 IPR018082 -
Pral5593g00003 523 PRINTS Pollen allergen Amb family signature 423 442 IPR018082 -
Pral5593g00003 523 SMART amb_all 249 446 IPR002022 -
Pral5593g00003 523 PANTHER PECTATE LYASE 18-RELATED 150 520 IPR045032 GO:0030570
Pral5593g00003 523 FunFam Pectate lyase 174 516 - -
Pral5593g00003 523 Gene3D - 174 516 IPR012334 -
Pral5593g00003 523 SUPERFAMILY Pectin lyase-like 157 517 IPR011050 -
Pral5593g00003 523 Pfam Pectate lyase 255 440 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5593g00003 Pral-Chr5593 11627 15853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5593g00003 131 523 Polysaccharide Lyase AT5G63180 75.750 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5593g00003 K01728 - gmx:100794814 714.146