Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5586g00004 ATGGAAACTGAAAATTCTGATGTGTCAAAGGCTGAAGAATTCAAAATCCTTGCAAACGAAGCATTCAATGCTCGCAAATATGGCCAAGCTATTGATTTATATACACAAGCAGTTGAACTGAACAGTCGAAATGCTGTTTACTGGGCCAATCGTGCCTTTGCACATCTTAGGCTTGAGGAATATGGTAGTGCGATACAAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATATACAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGCCATGGGGAAGTTCAAGGAAGCACTGAAGGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGATCCTGATGCGACAAGGAAACTAAAGGAATGTGAAAAGGCAGTTATGAAACTTAAATTTGAAGAAGCAATTTCTGCACCAGATGCTGAAAGGCGTTCAGTAGCTGAATCCATAGATTTCCGTTCTATAGGAAAGGGTCACAATTCTTTGATGCCCACCGAATTGGCTATAGCAGCAGTGACAGTGGCAGTTATGGCAGCAGTTGTGATGTTGTTCAGGACATCAGTGGCCACAATGGTAGCTGCAGTTGTGGTTGGTCTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTAGCTACGATGCTGGTATAATTAGCAGGAGTGATTTACATGACCTAGATGTGGAGCCACAATACTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGATGATTTTAAGAACCAAAAGTGCATACACAAAAGGTATGCCTACCAAATTGTATTGCAAACAAGAGAGATGTTGTTAGCCTTGCCTCCTCTTGTTGATATAAATGTTCCTGATGGCAAACATTTCACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTCTTAAATATTTTTGAGCTTAATGGGCTTCCCTCAGAAGAGAATCCATACCTTTTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCACTGGAAGTCATCCTCACTTTGTTTGCATTCAAGTGCATGTCTCCCTCAGCCATATATCTAGCAAGAGGGAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTTCGCTCGAAGCTAAGCGACACATTTGTGGAACTATTTGCAGAAGTCTTCTGCTGTTTACCGTTGGCTCATGTGATCAATGATAAGGTATTTGTGGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTGAAACTCTCTGACATCAGAGCAATAAACCGATTTTGCGAGCCTCCGGAAGAAGGATTAATGTGTGAATTGCTATGGAGTGATCCACAACCTCTTCCTGGACGGGGCCCAAGCAAGCGTGGTGTCGGTCTTTCTTTTGGTCCAGATGTGACAAAAAGCTTTTTGCAGGAAAATAATTTAGAGTTAGTTGTCAGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTATTCTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCATTTATTCGATTTGAAGCACCTGATTTGAAGCCAAACATTGTTACGTACTCAGCAGTGCCACACCCGGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTTCGGATGTTCTCATAG 1656 0.4191 METENSDVSKAEEFKILANEAFNARKYGQAIDLYTQAVELNSRNAVYWANRAFAHLRLEEYGSAIQDATKAIEVDPKYTKGYYRRGAAHLAMGKFKEALKDFQQVKKMCPNDPDATRKLKECEKAVMKLKFEEAISAPDAERRSVAESIDFRSIGKGHNSLMPTELAIAAVTVAVMAAVVMLFRTSVATMVAAVVVGLLLLLGAYWWSSYDAGIISRSDLHDLDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCIHKRYAYQIVLQTREMLLALPPLVDINVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCCLPLAHVINDKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGPDVTKSFLQENNLELVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTYSAVPHPDVKPMAYANNFLRMFS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5586g00004 551 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Pral5586g00004 551 Pfam Tetratricopeptide repeat 17 77 - -
Pral5586g00004 551 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Pral5586g00004 551 Pfam PPP5 TPR repeat region 215 281 IPR013235 -
Pral5586g00004 551 Pfam Calcineurin-like phosphoesterase 289 483 IPR004843 GO:0016787
Pral5586g00004 551 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 544 - -
Pral5586g00004 551 CDD MPP_PP5_C 229 544 IPR041753 -
Pral5586g00004 551 FunFam Serine/threonine-protein phosphatase 5 209 550 - -
Pral5586g00004 551 SMART tpr_5 45 78 IPR019734 GO:0005515
Pral5586g00004 551 SMART tpr_5 11 44 IPR019734 GO:0005515
Pral5586g00004 551 SMART tpr_5 79 112 IPR019734 GO:0005515
Pral5586g00004 551 Gene3D - 208 550 IPR029052 -
Pral5586g00004 551 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Pral5586g00004 551 Gene3D Tetratricopeptide repeat domain 2 156 IPR011990 GO:0005515
Pral5586g00004 551 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Pral5586g00004 551 SMART pp2a_7 257 533 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 319 346 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 416 443 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 494 510 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 289 316 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 352 376 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 472 492 IPR006186 GO:0016787
Pral5586g00004 551 PRINTS Serine/threonine phosphatase family signature 386 412 IPR006186 GO:0016787
Pral5586g00004 551 SUPERFAMILY Metallo-dependent phosphatases 238 545 IPR029052 -
Pral5586g00004 551 PIRSF PPPtase_5 1 551 - -
Pral5586g00004 551 SUPERFAMILY TPR-like 8 136 IPR011990 GO:0005515
Pral5586g00004 551 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5586g00004 Pral-Chr5586 5991 14676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5586g00004 292 478 Calmodulin-binding Proteins AT5G63870 36.652 1.13e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5586g00004 K04460 - gmx:100820099 971.844